Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011067 (aroB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011067 showshow history
Names
aroB JW3352 ECK3376 b3389
Product
3-dehydroquinate synthase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3517398 3518486 1089 363
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001278
EnteroFam0011067: Trusted threshold=1003.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR002658 (IPR002658 (DEPRECATED) 3-dehydroquinate synthase AroB) Apr 2008
Automated Process Approved IPR030960 (IPR030960 3-dehydroquinate synthase domain) Jul 2018
Automated Process Approved IPR016037 (IPR016037 3-dehydroquinate synthase AroB) Jul 2018
Automated Process Approved PF01761 (PF01761 3-dehydroquinate synthase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009423 chorismate biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009073 aromatic amino acid family biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002658
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0003856 3-dehydroquinate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002658
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name aroB Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK3376 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW3352 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3389 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product 3-dehydroquinate synthase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name dehydroquinate synthase Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name 3-dehydroquinate synthase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0011067: Trusted threshold=1003.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001278
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR002658 (DEPRECATED) 3-dehydroquinate synthase AroB Protein Sequence Similarity - InterPro Domain: IPR002658
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01761 3-dehydroquinate synthase Protein Sequence Similarity - PFAM Model Name: PF01761
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR030960 3-dehydroquinate synthase domain Protein Sequence Similarity - InterPro Domain: IPR030960
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR016037 3-dehydroquinate synthase AroB Protein Sequence Similarity - InterPro Domain: IPR016037
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 4.2.3.4 Published Annotation - Swiss-Prot Accession Number: P07639 Feb 2006
Person Uncurated MultiFun 1.5.1.20 (metabolism; building block biosynthesis; amino acids; chorismate) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1789791 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10074 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P07639 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947927 Published Annotation - Entrez Gene Database ID: 947927
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref ASAP:ABE-0011067 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P07639 Published Annotation - Swiss-Prot Accession Number: P07639 Jan 2005
Person Approved function enzyme; Amino acid biosynthesis: Chorismate Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Uncurated mutant phenotype complementation of an afuABC operon from Actinobacillus pleuropneumoniae enabled the aroB mutant strain of E. coli K-12 to grow in iron-limited media (4 mM dipyridyl) Experimental - PubMed ID: 8807793
Reference: Escherichia coli K-12 H1443 		Aug 2007
Automated Process Approved note GO_process: GO:0009423 - chorismate biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76414.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.97
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model the E-matrix Experimental - PubMed ID: 19282977
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0009073 aromatic amino acid family biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002658
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009423 chorismate biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0003856 3-dehydroquinate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002658
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001278 aroB CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000767 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000351 aroB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000290 aroB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001037 aroB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000587 aroB CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002516 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002266 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129808 aroB CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0105206 aroB CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104653 aroB CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004041 aroB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004475 aroB CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000387 aroB CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000875 aroB CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004690 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020823 aroB CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003911 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004265 aroB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0306398 aroB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003657 aroB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003314 aroB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001186 aroB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008792 aroB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003513 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007707 aroB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003434 aroB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000814 aroB CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005701 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006405 aroB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008222 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080335 aroB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003870 aroB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004516 aroB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007161 aroB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005365 aroB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003870 aroB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008293 aroB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004646 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008033 aroB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006546 aroB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006092 aroB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009527 aroB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005416 aroB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007342 aroB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005125 aroB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005194 aroB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005035 aroB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0004919 aroB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005520 aroB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028399 aroB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006557 aroB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008273 aroB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004084 aroB CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003155 aroB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003981 aroB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004023 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004018 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003917 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003872 aroB CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178014 aroB pseudogene
Automated Process Approved Go view Escherichia coli SE11 AFS-0003721 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003662 aroB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134303 aroB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002576 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003896 aroB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003428 aroB CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000428 aroB CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003808 aroB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002079 aroB CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004742 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002813 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000320 aroB CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002957 aroB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001039 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003774 aroB CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0000380 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011418 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000451 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0288527 aroB CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006696 aroB CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064417 aroB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002377 aroB CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002220 aroB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002453 aroB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009139 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0136965 aroB CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0005204 aroB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007852 aroB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004322 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003996 aroB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008103 aroB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0010847 aroB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012103 aroB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005391 aroB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008150 aroB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005500 aroB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006291 aroB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007003 aroB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007246 aroB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008113 aroB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006741 aroB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003384 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003350 aroB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004357 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008272 aroB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004719 aroB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007752 aroB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004557 aroB CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0114076 aroB CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085746 aroB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004204 aroB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0100790 aroB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005735 aroB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005159 aroB CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001245 aroB CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0263838 aroB CDS
Person Approved Go view Shigella boydii 227 ADV-0003688 aroB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009185 aroB CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004174 aroB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075667 aroB CDS
Person Approved Go view Shigella flexneri 301 ABT-0089643 aroB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003606 aroB CDS
Person Approved Go view Shigella sonnei 046 ADD-0003834 aroB CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002727 VC2628 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000107 aroB CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000046 aroB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001499 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011462 aroB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001101 aroB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003750 aroB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000979 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234572 aroB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007849 aroB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003960 aroB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007388 aroB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003186 aroB CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0115801 aroB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006939 aroB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008404 aroB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000682 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005392 aroB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006810 aroB CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033730 aroB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004984 aroB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004689 aroB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000094 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004484 aroB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0008001 aroB CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003867 aroB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004690 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000271 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0003964 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001306 aroB CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21151mutantTn5 InsertionRequest the StrainABE-0011067aroBaroB::Tn5KAN-I-SceI at position 150 in Plus orientation ,+ pKD460Blattner Laboratory
FB21152mutantTn5 InsertionRequest the StrainABE-0011067aroBaroB::Tn5KAN-I-SceI at position 150 in Plus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3512398 to 3523486
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0285600repeat_regionforward35125113512600Downstream
ABE-0011056trpSCDScomplement35126343513638Downstream
ABE-0011058gphCDScomplement35136313514389Downstream
ABE-0011061rpeCDScomplement35143823515059Downstream
ABE-0011063damCDScomplement35150773515913Downstream
ABE-0011065damXCDScomplement35160203517306Downstream
ABE-0011067aroBCDScomplement35173983518486Matches
ABE-0011069aroKCDScomplement35185433519064Upstream
ABE-0011071hofQCDScomplement35194653520703Upstream
ABE-0011073hofPCDScomplement35206153521019Upstream
ABE-0011075hofOCDScomplement35210093521449Upstream
ABE-0011077hofNCDScomplement35214333521972Upstream
ABE-0011079hofMCDScomplement35219723522751Upstream
ABE-0011082mrcACDSforward35228713525423Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.