Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011069 (aroK) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011069 showshow history
Names
aroK JW5947 ECK3377 b3390
Product
shikimate kinase I
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3518543 3519064 522 174
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001279
EnteroFam0011069: Trusted threshold=513.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR000623 (IPR000623 Shikimate kinase/Threonine synthase-like 1) Apr 2008
Automated Process Approved IPR031322 (IPR031322 Shikimate kinase/gluconokinase) Jul 2018
Automated Process Approved IPR027417 (IPR027417 P-loop containing nucleoside triphosphate hydrolase) Jul 2018
Automated Process Approved PF01202 (PF01202 Shikimate kinase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009423 chorismate biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000623
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004765 shikimate kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000623
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name aroK Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK3377 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW5947 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3390 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product shikimate kinase I Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name shikimate kinase I Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0011069: Trusted threshold=513.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001279
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR027417 P-loop containing nucleoside triphosphate hydrolase Protein Sequence Similarity - InterPro Domain: IPR027417
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR031322 Shikimate kinase/gluconokinase Protein Sequence Similarity - InterPro Domain: IPR031322
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000623 Shikimate kinase/Threonine synthase-like 1 Protein Sequence Similarity - InterPro Domain: IPR000623
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01202 Shikimate kinase Protein Sequence Similarity - PFAM Model Name: PF01202
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 2.7.1.71 Published Annotation - Swiss-Prot Accession Number: P0A6D7 Feb 2006
Person Uncurated MultiFun 1.5.1.20 (metabolism; building block biosynthesis; amino acids; chorismate) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A6D7 Published Annotation - Swiss-Prot Accession Number: P0A6D7 Jan 2006
Automated Process Approved db xref GeneID:2847759 Published Annotation - Entrez Gene Database ID: 2847759
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:87082255 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A6D7 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0011069 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10081 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Amino acid biosynthesis: Chorismate Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_process: GO:0009423 - chorismate biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76415.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model the E-matrix Experimental - PubMed ID: 19282977
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0009423 chorismate biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004765 shikimate kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000623
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000623
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001279 aroK CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000768 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000214 aroK CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000253 aroK CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000460 aroK CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000290 aroK CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002515 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002267 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129809 aroK CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0105207 aroK CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104654 aroK CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004042 aroK CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004474 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000386 aroK CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000874 aroK CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004689 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020822 aroK CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003912 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004264 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0306400 aroK CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003658 aroK CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003315 aroK CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001187 aroK CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008791 aroK CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003514 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007706 aroK CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003435 aroK CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000813 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005700 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006406 aroK CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008221 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080336 aroK CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003871 aroK CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007162 aroK CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005364 aroK CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003871 aroK CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008294 aroK CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004647 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008034 aroK CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006547 aroK CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006093 aroK CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005328 aroK CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009528 aroK CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005415 aroK CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007343 aroK CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005126 aroK CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005195 aroK CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005036 aroK CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0004920 aroK CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005521 aroK CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028400 aroK CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006556 aroK CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008274 aroK CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004083 aroK CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003156 aroK CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003980 aroK CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004024 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004019 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003916 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003873 aroK CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178015 aroK CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003722 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003663 aroK CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134304 aroK CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002577 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003897 aroK CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003429 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000429 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003809 aroK CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002080 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004741 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002814 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000321 aroK CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002958 aroK CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001038 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003775 aroK CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0000379 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011419 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000452 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0288526 aroK CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006697 aroK CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064418 aroK CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002387 aroK CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0002221 aroK CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002454 aroK CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009140 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0136967 aroK CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0005205 aroK CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007853 aroK CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004321 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003997 aroK CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008104 aroK CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0010849 aroK CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012099 aroK CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005390 aroK CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008151 aroK CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005501 aroK CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006290 aroK CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007004 aroK CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007247 aroK CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008114 aroK CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006740 aroK CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003385 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003351 aroK CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008273 aroK CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004718 aroK CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007753 aroK CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004558 aroK CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0114073 aroK CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085745 aroK CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004205 aroK CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0100792 aroK CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005734 aroK CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005158 aroK CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005068 aroK CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001244 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0263837 aroK CDS
Person Approved Go view Shigella boydii 227 ADV-0003689 aroK CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009186 aroK CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003520 aroK CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004173 aroK CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075666 aroK CDS
Person Approved Go view Shigella flexneri 301 ABT-0089644 aroK CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003607 aroK CDS
Person Approved Go view Shigella sonnei 046 ADD-0003835 aroK CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002728 VC2629 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000106 aroK CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000048 aroK CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001500 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011465 aroK CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001102 aroK CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003751 aroK CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000978 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234570 aroK CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007850 aroK CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003961 aroK CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007389 aroK CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003185 aroK CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0115797 aroK CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006940 aroK CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008403 aroK CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000683 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005393 aroK CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006809 aroK CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033729 aroK CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004985 aroK CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004690 aroK CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000093 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004485 aroK CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0008002 aroK CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003868 aroK CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004691 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000270 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0003969 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001305 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3513543 to 3524064
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0011056trpSCDScomplement35126343513638Downstream
ABE-0011058gphCDScomplement35136313514389Downstream
ABE-0011061rpeCDScomplement35143823515059Downstream
ABE-0011063damCDScomplement35150773515913Downstream
ABE-0011065damXCDScomplement35160203517306Downstream
ABE-0011067aroBCDScomplement35173983518486Downstream
ABE-0011069aroKCDScomplement35185433519064Matches
ABE-0011071hofQCDScomplement35194653520703Upstream
ABE-0011073hofPCDScomplement35206153521019Upstream
ABE-0011075hofOCDScomplement35210093521449Upstream
ABE-0011077hofNCDScomplement35214333521972Upstream
ABE-0011079hofMCDScomplement35219723522751Upstream
ABE-0011082mrcACDSforward35228713525423Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.