Escherichia coli K-12 MG1655
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011082 (mrcA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011082 showshow history
Names
mrcA ponA JW3359 ECK3383 b3396
Product
penicillin-binding protein 1A (PBP1A)
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3522871 3525423 2553 851
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001281
EnteroFam0011082: Trusted threshold=2342.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043).
Jan 2006
Automated Process Approved IPR001460 (IPR001460 Penicillin-binding protein, transpeptidase) Apr 2008
Automated Process Approved IPR011816 (IPR011816 (DEPRECATED) Penicillin-binding protein 1A) Apr 2008
Automated Process Approved IPR012338 (IPR012338 Beta-lactamase/transpeptidase-like) Apr 2008
Automated Process Approved IPR001264 (IPR001264 Glycosyl transferase, family 51) Apr 2008
Automated Process Approved IPR031376 (IPR031376 Penicillin-binding protein, OB-like domain) Jul 2018
Automated Process Approved IPR023346 (IPR023346 Lysozyme-like domain superfamily) Jul 2018
Automated Process Approved PF00905 (PF00905 Penicillin binding protein transpeptidase domain) Jul 2018
Automated Process Approved PF00912 (PF00912 Transglycosylase) Jul 2018
Automated Process Approved PF17092 (PF17092 Penicillin-binding protein OB-like domain) Jul 2018
Automated Process Uncurated GT51 (GT51 Glycosyl Transferase Family 51) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0046677 response to antibiotic GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011816
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Uncurated GO biological process GO:0009252 peptidoglycan biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009252 peptidoglycan biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011816
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO biological process GO:0009273 peptidoglycan-based cell wall biogenesis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001460
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Uncurated GO biological process GO:0042493 response to drug Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0009274 peptidoglycan-based cell wall GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001264
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001264
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0016763 pentosyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011816
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0008233 peptidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011816
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0008658 penicillin binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001460
Reference: Escherichia coli K-12 MG1655
Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name mrcA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655
Sep 2007
Person Approved synonym JW3359 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated synonym ponA Published Sequence Analysis - PubMed ID: 345275
Reference: Escherichia coli K-12
Mar 2008
Person Approved synonym ECK3383 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3396 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product penicillin-binding protein 1A (PBP1A) Published Sequence Analysis - PubMed ID: 3882429
Reference: Escherichia coli K-12
Mar 2008
Person Uncurated alternate product name bifunctional penicillin-binding protein 1a: transglycosylase (N-terminal); transpeptidase (C-terminal) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name peptidoglycan synthetase; penicillin-binding protein 1A Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Jan 2006
Person Approved alternate product name peptidoglycan transglycosylase/transpeptidase Experimental - PubMed ID: 7006606
Reference: Escherichia coli K-12
Mar 2008
Automated Process Approved alternate product name fused penicillin-binding protein 1a: murein transglycosylase/murein transpeptidase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Protein Family
Person Approved EnteroFam EnteroFam0011082: Trusted threshold=2342.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001281
Reference: EnteroFams
Jan 2006
Automated Process Approved protein family PF00905 Penicillin binding protein transpeptidase domain Protein Sequence Similarity - PFAM Model Name: PF00905
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family PF17092 Penicillin-binding protein OB-like domain Protein Sequence Similarity - PFAM Model Name: PF17092
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Uncurated protein family GT51 Glycosyl Transferase Family 51 Protein Sequence Similarity - CAZy Model Name: GT51
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR001264 Glycosyl transferase, family 51 Protein Sequence Similarity - InterPro Domain: IPR001264
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR023346 Lysozyme-like domain superfamily Protein Sequence Similarity - InterPro Domain: IPR023346
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR012338 Beta-lactamase/transpeptidase-like Protein Sequence Similarity - InterPro Domain: IPR012338
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR031376 Penicillin-binding protein, OB-like domain Protein Sequence Similarity - InterPro Domain: IPR031376
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR011816 (DEPRECATED) Penicillin-binding protein 1A Protein Sequence Similarity - InterPro Domain: IPR011816
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR001460 Penicillin-binding protein, transpeptidase Protein Sequence Similarity - InterPro Domain: IPR001460
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family PF00912 Transglycosylase Protein Sequence Similarity - PFAM Model Name: PF00912
Reference: Escherichia coli K-12 MG1655
Jul 2018
Other
Person Approved EC number 2.4.2.- Published Annotation - Swiss-Prot Accession Number: P02918 Feb 2006
Person Approved EC number 3.4.-.- Published Annotation - Swiss-Prot Accession Number: P02918 Feb 2006
Person Uncurated MultiFun 1.6.7 (metabolism; macromolecules (cellular constituent) biosynthesis; peptidoglycan (murein)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.2 (cell structure; peptidoglycan (murein)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 5.1 (cell processes; cell division) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 5.6.4 (cell processes; protection; drug resistance/sensitivity) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GeneID:947907 Published Annotation - Entrez Gene Database ID: 947907
Reference: Escherichia coli K-12 MG1655
Jun 2009
Person Approved db xref UniProtKB:P02918 Published Annotation - Swiss-Prot Accession Number: P02918 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P02918 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref ASAP:ABE-0011082 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GI:87082258 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref EcoGene:EG10748 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved function enzyme; Murein sacculus, peptidoglycan Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Automated Process Approved note peptidoglycan synthetase; penicillin-binding protein 1A; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0009252 - peptidoglycan biosynthetic process; GO_process: GO:0042493 - response to drug Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved protein id AAC76421.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 6.29
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 3.70
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655
Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0009273 peptidoglycan-based cell wall biogenesis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001460
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO biological process GO:0009252 peptidoglycan biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011816
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Uncurated GO biological process GO:0009252 peptidoglycan biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0042493 response to drug Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0046677 response to antibiotic GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011816
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Approved GO cellular component GO:0009274 peptidoglycan-based cell wall GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001264
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Approved GO molecular function GO:0016763 pentosyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011816
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001264
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0008233 peptidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011816
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0008658 penicillin binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001460
Reference: Escherichia coli K-12 MG1655
Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001281 mrcA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000771 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000928 mrcA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000770 mrcA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000653 mrcA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000241 mrcA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002509 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002273 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004048 mrcA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004467 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000381 mrcA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000869 mrcA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004678 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015100 mrcA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003918 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004258 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0306419 mrcA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003664 mrcA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003321 mrcA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001194 mrcA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004931 mrcA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003520 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007700 mrcA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003440 mrcA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000807 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005691 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006412 mrcA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008215 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080342 mrcA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003878 mrcA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004524 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007168 mrcA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005358 mrcA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003877 mrcA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008300 mrcA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004653 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008040 mrcA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006553 mrcA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006099 mrcA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005322 mrcA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009535 mrcA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005408 mrcA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007350 mrcA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005132 mrcA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005201 mrcA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005042 mrcA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0004927 mrcA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005528 mrcA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028406 mrcA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006550 mrcA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008279 mrcA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004077 mrcA CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003162 mrcA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003974 mrcA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004030 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004026 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003910 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003879 mrcA CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003728 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003670 mrcA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134310 mrcA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002583 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003903 mrcA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003434 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000435 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003815 mrcA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002085 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004732 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002820 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000327 mrcA CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002963 mrcA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001032 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003781 mrcA CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0000373 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011425 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000458 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0288519 mrcA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006702 mrcA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064424 mrcA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002447 mrcA CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001099 mrcA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002461 mrcA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009149 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0136977 mrcA CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0005211 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007859 mrcA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004315 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004003 mrcA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008110 mrcA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0010868 mrcA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012079 mrcA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005384 mrcA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008157 mrcA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005507 mrcA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006283 mrcA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007010 mrcA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007253 mrcA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008120 mrcA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006734 mrcA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003391 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003357 mrcA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004365 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008279 mrcA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004712 mrcA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007759 mrcA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004564 mrcA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0114063 mrcA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085739 mrcA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004211 mrcA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0100808 mrcA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005728 mrcA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005152 mrcA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005074 mrcA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001238 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0263831 mrcA CDS
Person Approved Go view Shigella boydii 227 ADV-0003695 mrcA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009192 mrcA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003513 mrcA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004166 mrcA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075659 mrcA CDS
Person Approved Go view Shigella flexneri 301 ABT-0089649 mrcA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003613 mrcA CDS
Person Approved Go view Shigella sonnei 046 ADD-0003841 mrcA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002734 VC2635 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000056 mrcA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001506 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011478 b3396 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001108 mrcA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003757 mrcA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000972 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234555 mrcA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007856 mrcA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003969 mrcA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007395 mrcA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003179 mrcA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0115786 mrcA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006946 mrcA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008398 mrcA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0004198 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005400 mrcA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006802 mrcA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033720 mrcA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004993 mrcA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004697 mrcA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000084 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004491 mrcA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0008008 mrcA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003874 mrcA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004699 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000262 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0003987 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001298 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)

Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21157mutantTn5 InsertionRequest the StrainABE-0011082mrcAmrcA::Tn5KAN-I-SceI at position 1872 in Minus orientation ,- pKD465Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3517871 to 3530423
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0011067aroBCDScomplement35173983518486Upstream
ABE-0011069aroKCDScomplement35185433519064Upstream
ABE-0011071hofQCDScomplement35194653520703Upstream
ABE-0011073hofPCDScomplement35206153521019Upstream
ABE-0011075hofOCDScomplement35210093521449Upstream
ABE-0011077hofNCDScomplement35214333521972Upstream
ABE-0011079hofMCDScomplement35219723522751Upstream
ABE-0011082mrcACDSforward35228713525423Matches
ABE-0285601repeat_regionforward35254783525575Downstream
ABE-0011086nudECDScomplement35255893526149Downstream
ABE-0011090igaACDSforward35264693528604Downstream
ABE-0011092yrfGCDSforward35286693529337Downstream
ABE-0011094hslRCDSforward35293483529749Downstream
ABE-0011096hslOCDSforward35297743530652Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.