Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011086 (nudE) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011086 showshow history
Names
nudE yrfE JW3360 ECK3384 b3397
Product
ADP-ribose diphosphatase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3525589 3526149 561 187
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001282
EnteroFam0011086: Trusted threshold=468.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR015797 (IPR015797 NUDIX hydrolase-like domain superfamily) Apr 2008
Automated Process Approved IPR000086 (IPR000086 NUDIX hydrolase domain) Apr 2008
Automated Process Approved PF00293 (PF00293 NUDIX domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000086
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name nudE Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW3360 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym yrfE Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Approved synonym ECK3384 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3397 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product ADP-ribose diphosphatase Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved alternate product name adenosine nucleotide hydrolase; substrates include Ap3A, Ap2A, ADP-ribose, NADH Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated alternate product name conserved protein, MutT-like Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0011086: Trusted threshold=468.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001282
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF00293 NUDIX domain Protein Sequence Similarity - PFAM Model Name: PF00293
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR015797 NUDIX hydrolase-like domain superfamily Protein Sequence Similarity - InterPro Domain: IPR015797
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000086 NUDIX hydrolase domain Protein Sequence Similarity - InterPro Domain: IPR000086
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 3.6.1.- Published Annotation - Swiss-Prot Accession Number: P45799 Feb 2006
Automated Process Uncurated EC number 3.-.-.- Published Annotation - Database Name: EC2GO: GO:0016787
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12926 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0011086 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P45799 Published Annotation - Swiss-Prot Accession Number: P45799 Jan 2005
Automated Process Approved db xref GI:1789800 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947906 Published Annotation - Entrez Gene Database ID: 947906
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P45799 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76422.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000086
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001282 nudE CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000772 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000803 nudE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001086 nudE CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001136 nudE CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000549 nudE CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002508 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002274 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004049 nudE CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004466 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000380 nudE CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0000868 nudE CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004677 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015099 nudE CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003919 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004257 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0306424 nudE CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003665 yrfE CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003322 nudE CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001195 nudE CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004930 nudE CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003521 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007699 nudE CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003441 nudE CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000806 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005690 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006413 nudE CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008214 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080343 nudE CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003879 nudE CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004525 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007169 nudE CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005357 nudE CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003878 nudE CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008301 nudE CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004654 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008041 nudE CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006554 nudE CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006100 nudE CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005321 nudE CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009536 nudE CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005407 nudE CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007351 nudE CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005133 nudE CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005202 nudE CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005043 nudE CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0004928 nudE CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005529 nudE CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028407 nudE CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006549 nudE CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008280 nudE CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004076 nudE CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003163 nudE CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003973 nudE CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004031 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004027 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003909 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003880 nudE CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178024 nudE CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003729 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003671 nudE CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134311 nudE CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002584 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003904 nudE CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003435 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000436 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003816 yrfE CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002086 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004731 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002821 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000328 nudE CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002964 nudE CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001031 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003782 nudE CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000372 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011426 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000459 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288518 nudE CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006703 yrfE CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064425 nudE CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002389 nudE CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0002224 nudE CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002462 nudE CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009151 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0136979 nudE CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0005482 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007860 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004314 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004004 nudE CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008111 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0010874 yrfE CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012076 yrfE CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005381 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008158 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005508 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006282 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007011 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007254 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008121 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006733 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003392 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003358 nudE CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004366 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008280 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004711 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007760 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004565 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0114060 nudE CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085738 nudE CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004212 nudE CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0100810 nudE CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005727 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005151 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005075 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001237 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0263729 CDS
Person Approved Go view Shigella boydii 227 ADV-0003696 yrfE CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009193 nudE CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003512 nudE CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004165 yrfE CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075657 nudE CDS
Person Approved Go view Shigella flexneri 301 ABT-0089650 nudE CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003614 yrfE CDS
Person Approved Go view Shigella sonnei 046 ADD-0003842 nudE CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002820 VC2721 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0008216 nudE CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001507 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011483 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001109 nudE CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003758 nudE CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000971 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234554 nudE CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007857 nudE CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003971 nudE CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007396 nudE CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003178 nudE CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0115783 nudE CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006947 nudE CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008397 nudE CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0004197 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005401 nudE CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006801 nudE CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033719 nudE CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004994 nudE CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004699 nudE CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000083 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004492 nudE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0008009 nudE CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003875 nudE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004701 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000221 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0003991 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001297 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21158mutantTn5 InsertionRequest the StrainABE-0011086nudEyrfE::Tn5KAN-I-SceI at position 153 in Plus orientation ,- pKD465Blattner Laboratory
FB21159mutantTn5 InsertionRequest the StrainABE-0011086nudEyrfE::Tn5KAN-I-SceI at position 153 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3520589 to 3531149
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0011071hofQCDScomplement35194653520703Downstream
ABE-0011073hofPCDScomplement35206153521019Downstream
ABE-0011075hofOCDScomplement35210093521449Downstream
ABE-0011077hofNCDScomplement35214333521972Downstream
ABE-0011079hofMCDScomplement35219723522751Downstream
ABE-0011082mrcACDSforward35228713525423Downstream
ABE-0285601repeat_regionforward35254783525575Downstream
ABE-0011086nudECDScomplement35255893526149Matches
ABE-0011090igaACDSforward35264693528604Upstream
ABE-0011092yrfGCDSforward35286693529337Upstream
ABE-0011094hslRCDSforward35293483529749Upstream
ABE-0011096hslOCDSforward35297743530652Upstream
ABE-0011098yhgECDScomplement35307153532439Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.