Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011106 (pck) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011106 showshow history
Names
pck pckA JW3366 ECK3390 b3403
Product
phosphoenolpyruvate carboxykinase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3532818 3534440 1623 541
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001287
EnteroFam0011106: Trusted threshold=1592.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR008210 (IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal) Apr 2008
Automated Process Approved IPR001272 (IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising) Apr 2008
Automated Process Approved PF01293 (PF01293 Phosphoenolpyruvate carboxykinase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006094 gluconeogenesis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008210
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0006094 gluconeogenesis Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0017076 purine nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR008210
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001272
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004611 phosphoenolpyruvate carboxykinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008210
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005525 GTP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008210
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0004612 phosphoenolpyruvate carboxykinase (ATP) activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001272
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name pck Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK3390 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW3366 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym pckA Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Approved locus tag b3403 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product phosphoenolpyruvate carboxykinase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name phosphoenolpyruvate carboxykinase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0011106: Trusted threshold=1592.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001287
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF01293 Phosphoenolpyruvate carboxykinase Protein Sequence Similarity - PFAM Model Name: PF01293
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR008210
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising Protein Sequence Similarity - InterPro Domain: IPR001272
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 4.1.1.- Published Annotation - Database Name: EC2GO: GO:0004611
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 4.1.1.49 Published Annotation - Swiss-Prot Accession Number: P22259 Feb 2006
Person Uncurated MultiFun 1.7.8 (metabolism; central intermediary metabolism; gluconeogenesis) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10688 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P22259 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0011106 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945667 Published Annotation - Entrez Gene Database ID: 945667
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1789807 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P22259 Published Annotation - Swiss-Prot Accession Number: P22259 Jan 2005
Person Approved function enzyme; Central intermediary metabolism: Gluconeogenesis Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_process: GO:0006094 - gluconeogenesis Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76428.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Approved GO biological process GO:0006094 gluconeogenesis Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006094 gluconeogenesis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008210
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004611 phosphoenolpyruvate carboxykinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008210
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0004612 phosphoenolpyruvate carboxykinase (ATP) activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001272
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0017076 purine nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR008210
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001272
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005525 GTP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008210
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001287 pck CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000777 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000180 pck CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000111 pck CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000036 pck CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000185 pck CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002502 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002279 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004054 pckA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004458 pckA CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000375 pckA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000862 pckA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004671 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015088 pck CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003924 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004251 pckA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0306436 pckA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003670 pckA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003326 pckA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001200 pckA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004923 pckA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003527 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007692 pckA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003447 pckA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000799 pckA CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005683 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006421 pckA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008205 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080352 pck CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003887 pckA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004533 pckA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007177 pckA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005349 pckA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003884 pck CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008310 pckA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004663 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008048 pckA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006561 pckA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006107 pckA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005314 pckA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009543 pckA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005400 pckA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007358 pckA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005140 pckA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005209 pckA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005050 pckA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0004935 pckA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005537 pckA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028414 pck CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006540 pckA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008288 pckA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004070 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003169 pck CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003967 pck CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004038 pckA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004034 pckA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003902 pckA CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003889 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003737 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003679 pckA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134317 pck CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002593 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003912 pckA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003440 pckA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000441 pckA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002091 pckA CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004725 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002826 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000333 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002969 pckA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001026 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003787 pckA CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0000367 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000464 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0288512 pck CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006708 pckA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064431 pck CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002443 pckA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002467 pck CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009158 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0136990 pckA CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000240 pckA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007868 pckA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004308 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004011 pck CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008117 pckA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0010890 pckA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012059 pckA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005374 pckA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008165 pckA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005515 pckA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006275 pckA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007018 pckA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007261 pckA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008128 pckA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006727 pckA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003398 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003364 pck CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004375 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008287 pckA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004705 pckA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007767 pckA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004572 pckA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0114048 pck CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085732 pck CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004221 pckA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0100829 pck CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005720 pckA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005145 pckA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005082 pckA CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0263701 pckA CDS
Person Approved Go view Shigella boydii 227 ADV-0003702 pckA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009201 pckA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003504 pckA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004156 pckA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075651 pck CDS
Person Approved Go view Shigella flexneri 301 ABT-0089657 pck CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003620 pckA CDS
Person Approved Go view Shigella sonnei 046 ADD-0003848 pck CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002837 VC2738 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000105 pck CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0008225 pck CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001512 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011495 pck CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001114 pck CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003763 pck CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000966 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234542 pck CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007862 pckA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003977 pck CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007401 pckA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0004260 pckA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0115766 pck CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006952 pckA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008392 pckA CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005406 pckA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006796 pckA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033714 pck CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004999 pckA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004705 pck CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000077 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004497 pckA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0008014 pckA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003880 pck CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004708 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000214 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0004014 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001292 pckA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21164mutantTn5 InsertionRequest the StrainABE-0011106pckpckA::Tn5KAN-I-SceI at position 527 in Plus orientation ,- pKD465Blattner Laboratory
FB21165mutantTn5 InsertionRequest the StrainABE-0011106pckpckA::Tn5KAN-I-SceI at position 527 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3527818 to 3539440
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0011090igaACDSforward35264693528604Upstream
ABE-0011092yrfGCDSforward35286693529337Upstream
ABE-0011094hslRCDSforward35293483529749Upstream
ABE-0011096hslOCDSforward35297743530652Upstream
ABE-0011098yhgECDScomplement35307153532439Upstream
ABE-0011106pckCDSforward35328183534440Matches
ABE-0011108envZCDScomplement35345163535868Downstream
ABE-0011110ompRCDScomplement35358653536584Downstream
ABE-0011117greBCDSforward35368123537288Downstream
ABE-0011120yhgFCDSforward35373853539706Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.