Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011148 (gntT) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011148 showshow history
Names
gntT gntTalpha yhgC JW5690 ECK3402 usgA gntM b3415
Product
high-affinity gluconate transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3546559 3547875 1317 439
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003474 (IPR003474 Gluconate transporter) Apr 2008
Automated Process Approved PF02447 (PF02447 GntP family permease) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0015725 (DEPRECATED) gluconate transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003474
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0035429 gluconate transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003474
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003474
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0015128 gluconate transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003474
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name gntT Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym gntM Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym usgA Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Automated Process Approved synonym gntTalpha Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved synonym yhgC Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW5690 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK3402 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3415 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product high-affinity gluconate transporter Published Annotation - EcoCyc Accession Number: EG12380
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Uncurated alternate product name high-affinity gluconate permease in GNT I system (GntP family) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name high-affinity transport of gluconate / gluconate permease Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Approved alternate product name gluconate transporter, high-affinity GNT I system Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Automated Process Approved protein family PF02447 GntP family permease Protein Sequence Similarity - PFAM Model Name: PF02447
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR003474 Gluconate transporter Protein Sequence Similarity - InterPro Domain: IPR003474
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 4.S.69 (transport; substrate; gluconate) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.2.A.8 (transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The Gluconate:H+ Symporter (GntP) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12380 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:48994935 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P39835 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0011148 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947924 Published Annotation - Entrez Gene Database ID: 947924
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P39835 Published Annotation - Swiss-Prot Accession Number: P39835 Jan 2005
Person Approved function transport; Transport of small molecules: Carbohydrates, organic acids, alcohols Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note high-affinity transport of gluconate / gluconate permease; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAT48179.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved sequence correction version m56: 3 frameshift errors corrected; aa 55-57 ADV to GGTL Experimental - GenBank Accession Number: AG613287
Reference: Escherichia coli 		May 2004
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0035429 gluconate transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003474
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0015725 (DEPRECATED) gluconate transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003474
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003474
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0015128 gluconate transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003474
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001991 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002017 gntT CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002238 gntT CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002794 gntT CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000086 gntT CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000577 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000364 gntT_1 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000848 gntT_1 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004639 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015048 gntT CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003957 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004239 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001220 gntT CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004910 gntT CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003539 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007680 gntT CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003457 gntT CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000786 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005670 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006436 gntT CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080368 gntT CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003900 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004548 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007192 gntT CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005336 gntT CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003897 gntT CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008324 gntT CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004677 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008061 gntT CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006574 gntT CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006120 gntT CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005301 gntT CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009556 gntT CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005386 gntT CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007371 gntT CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005153 gntT CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005222 gntT CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005063 gntT CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0004949 gntT CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005550 gntT CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028426 gntT CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006527 gntT CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008301 gntT CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004058 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003180 gntT CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003955 gntT CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004055 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004049 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003887 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003905 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178048 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003753 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003693 gntT CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134329 gntT CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002606 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003925 gntT CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003481 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003833 gntT CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002103 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004659 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000403 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002955 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000440 gntT CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003765 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001153 gntT CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003120 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008807 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002835 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287434 gntT CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004240 gntT CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062098 gntT CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002401 gntT CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0003623 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007881 gntT CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004295 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004025 gntT CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008130 gntT CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0010934 gntT CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012017 gntT CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005361 gntT CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008178 gntT CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005528 gntT CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006263 gntT CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007031 gntT CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007274 gntT CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008141 gntT CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006714 gntT CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003410 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003376 gntT CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004391 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008300 gntT CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004692 gntT CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007780 gntT CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004585 gntT CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0114023 gntT CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085720 gntT CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004236 gntT CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0100868 gntT CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005707 gntT CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005132 gntT CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005095 gntT CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001197 CDS
Person Approved Go view Shigella boydii 227 ADV-0003717 gntT CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009215 gntT CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003490 gntT CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004144 gntT CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075634 gntT CDS
Person Approved Go view Shigella flexneri 301 ABT-0089673 gntT CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003636 gntT CDS
Person Approved Go view Shigella sonnei 046 ADD-0003862 gntT CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000128 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011599 gntT CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001149 gntM_2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001522 gntT CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000751 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242251 gntT CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008232 gntT CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004510 gntT CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007440 gntT CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003437 gntT CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128610 gntT CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005913 gntT CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007287 gntT CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001485 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006063 gntT CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007789 gntT CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033670 gntT CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006808 gntT CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004325 gntT CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003971 gntT CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006746 gntT CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0008057 gntT CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003915 gntT CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004751 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000169 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0004076 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001279 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21183mutantTn5 InsertionRequest the StrainABE-0011148gntTgntT::Tn5KAN-I-SceI at position 951 in Minus orientation ,+ pKD460Blattner Laboratory
FB21184mutantTn5 InsertionRequest the StrainABE-0011148gntTgntT::Tn5KAN-I-SceI at position 951 in Minus orientation ,- pKD465Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3541559 to 3552875
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0011126feoBCDSforward35404073542728Upstream
ABE-0011130feoCCDSforward35427283542964Upstream
ABE-0011134rpnACDSforward35431673544045Upstream
ABE-0011136bioHCDScomplement35440743544844Upstream
ABE-0011139yhgHCDSforward35448823545565Upstream
ABE-0011144nfuACDSforward35456243546199Upstream
ABE-0285603repeat_regionforward35462223546257Upstream
ABE-0011148gntTCDSforward35465593547875Matches
ABE-0285604repeat_regionforward35478873547973Downstream
ABE-0011151malQCDScomplement35479863550070Downstream
ABE-0011154malPCDScomplement35500803552473Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.