Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011151 (malQ) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011151 showshow history
Names
malQ malA JW3379 ECK3403 b3416
Product
4-alpha-glucanotransferase (amylomaltase)
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3547986 3550070 2085 695
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001295
EnteroFam0011151: Trusted threshold=1920.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR003385 (IPR003385 Glycoside hydrolase, family 77) Apr 2008
Automated Process Approved IPR013781 (IPR013781 (DEPRECATED) Glycoside hydrolase, catalytic domain) Apr 2008
Automated Process Approved IPR017853 (IPR017853 Glycoside hydrolase superfamily) Jul 2018
Automated Process Approved PF02446 (PF02446 4-alpha-glucanotransferase) Jul 2018
Automated Process Uncurated GH77 (GH77 Glycoside Hydrolase Family 77) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003385
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0000272 polysaccharide catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0043169 cation binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013781
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013781
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004134 4-alpha-glucanotransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003385
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name malQ Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Automated Process Approved synonym malA Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW3379 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK3403 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3416 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product 4-alpha-glucanotransferase (amylomaltase) Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name 4-alpha-glucanotransferase (amylomaltase) Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0011151: Trusted threshold=1920.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001295
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF02446 4-alpha-glucanotransferase Protein Sequence Similarity - PFAM Model Name: PF02446
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR013781 (DEPRECATED) Glycoside hydrolase, catalytic domain Protein Sequence Similarity - InterPro Domain: IPR013781
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR017853 Glycoside hydrolase superfamily Protein Sequence Similarity - InterPro Domain: IPR017853
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated protein family GH77 Glycoside Hydrolase Family 77 Protein Sequence Similarity - CAZy Model Name: GH77
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR003385 Glycoside hydrolase, family 77 Protein Sequence Similarity - InterPro Domain: IPR003385
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 2.4.1.25 Published Annotation - Swiss-Prot Accession Number: P15977 Feb 2006
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.2.4 (metabolism; macromolecule degradation; polysaccharides) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10561 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947923 Published Annotation - Entrez Gene Database ID: 947923
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P15977 Published Annotation - Swiss-Prot Accession Number: P15977 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P15977 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1789821 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0011151 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Degradation of polysaccharides Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0016052 - carbohydrate catabolic process; GO_process: GO:0000272 - polysaccharide catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76441.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003385
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0000272 polysaccharide catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013781
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0043169 cation binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013781
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004134 4-alpha-glucanotransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003385
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001295 malQ CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000786 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000337 malQ CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000592 malQ CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000950 malQ CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000235 malQ CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004065 malQ CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004446 malQ CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000363 malQ CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000847 malQ CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004656 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015075 malQ CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003936 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004238 malQ CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0306466 malQ CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003681 malQ CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003339 malQ CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001221 malQ CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004909 malQ CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003540 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007679 malQ CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003458 malQ CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000785 malQ CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005669 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006437 malQ CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080369 malQ CDS
Person Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003901 malQ pseudogene
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004549 malQ CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007193 malQ CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005335 malQ CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003898 malQ CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008325 malQ CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004678 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008062 malQ CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006575 malQ CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006121 malQ CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005300 malQ CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009557 malQ CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005385 malQ CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007372 malQ CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005154 malQ CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005223 malQ CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005064 malQ CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0004950 malQ CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005551 malQ CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028427 malQ CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006526 malQ CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008302 malQ CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004057 malQ CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003181 malQ CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003954 malQ CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004056 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004050 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003886 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003906 malQ CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003754 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003694 malQ CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134330 malQ CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002607 CDS
Person Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003926 malQ CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000465 malQ CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003834 malQ CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002104 malQ CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004712 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287844 malQ CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064460 malQ CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002367 malQ CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001109 malQ CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002513 malQ CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009198 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0137844 malQ CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007882 malQ CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004294 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004028 malQ CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008131 malQ CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0010939 malQ CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012014 malQ CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005360 malQ CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008179 malQ CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005529 malQ CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006262 malQ CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007032 malQ CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007275 malQ CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008142 malQ CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006713 malQ CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003411 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003377 malQ CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004392 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008301 malQ CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004691 malQ CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007781 malQ CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004586 malQ CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0114022 malQ CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085719 malQ CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004237 malQ CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0100870 malQ CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005706 malQ CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005131 malQ CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005096 malQ CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001214 malQ CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265059 malQ CDS
Person Approved Go view Shigella boydii 227 ADV-0003718 malQ CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009216 malQ CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003489 malQ CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004143 malQ CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075633 malQ CDS
Person Approved Go view Shigella flexneri 301 ABT-0089674 malQ CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003637 malQ CDS
Person Approved Go view Shigella sonnei 046 ADD-0003863 malQ CDS
Person Approved Go view Vibrio cholerae N16961 ADH-0002903 VCA0014 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0007698 malQ CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003359 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011513 malQ CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001125 malQ CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001541 malQ CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003658 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234513 malQ CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007874 malQ CDS
Person Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003991 malQ CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008754 malQ CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003161 malQ CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0115725 malQ CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006965 malQ CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008378 malQ CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001341 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005419 malQ CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007819 malQ CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033698 malQ CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005013 malQ CDS
Person Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004719 malQ CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000062 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004510 malQ CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0008028 malQ CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003892 malQ CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004722 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000199 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0004079 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001278 malQ CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21185mutantTn5 InsertionRequest the StrainABE-0011151malQmalQ::Tn5KAN-I-SceI at position 867 in Plus orientation ,+ pKD460Blattner Laboratory
FB21186mutantTn5 InsertionRequest the StrainABE-0011151malQmalQ::Tn5KAN-I-SceI at position 867 in Plus orientation ,- pKD465Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3542986 to 3555070
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0011134rpnACDSforward35431673544045Downstream
ABE-0011136bioHCDScomplement35440743544844Downstream
ABE-0011139yhgHCDSforward35448823545565Downstream
ABE-0011144nfuACDSforward35456243546199Downstream
ABE-0285603repeat_regionforward35462223546257Downstream
ABE-0011148gntTCDSforward35465593547875Downstream
ABE-0285604repeat_regionforward35478873547973Downstream
ABE-0011151malQCDScomplement35479863550070Matches
ABE-0011154malPCDScomplement35500803552473Upstream
ABE-0011162malTCDSforward35530853555790Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.