Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011198 (glgP) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011198 showshow history
Names
glgP glgY JW3391 ECK3414 b3428
Product
glycogen phosphorylase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3564134 3566581 2448 816
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR011833 (IPR011833 Glycogen/starch/alpha-glucan phosphorylase) Apr 2008
Automated Process Approved IPR000811 (IPR000811 Glycosyl transferase, family 35) Apr 2008
Automated Process Approved PF00343 (PF00343 Carbohydrate phosphorylase) Jul 2018
Automated Process Uncurated GT35 (GT35 Glycosyl Transferase Family 35) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011833
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0000271 polysaccharide biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0008184 glycogen phosphorylase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000811
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011833
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004645 1,4-alpha-oligoglucan phosphorylase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011833
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name glgP Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW3391 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym glgY Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK3414 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3428 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product glycogen phosphorylase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name glycogen phosphorylase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family IPR011833 Glycogen/starch/alpha-glucan phosphorylase Protein Sequence Similarity - InterPro Domain: IPR011833
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00343 Carbohydrate phosphorylase Protein Sequence Similarity - PFAM Model Name: PF00343
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated protein family GT35 Glycosyl Transferase Family 35 Protein Sequence Similarity - CAZy Model Name: GT35
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000811 Glycosyl transferase, family 35 Protein Sequence Similarity - InterPro Domain: IPR000811
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 2.4.1.1 Published Annotation - Swiss-Prot Accession Number: P0AC86 Feb 2006
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.6.9 (metabolism; macromolecules (cellular constituent) biosynthesis; cytoplasmic polysaccharides) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0011198 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10380 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AC86 Published Annotation - Swiss-Prot Accession Number: P0AC86 Jan 2006
Automated Process Approved db xref GI:2367228 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947931 Published Annotation - Entrez Gene Database ID: 947931
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AC86 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Macromolecule synthesis, modification: Polysaccharides - (cytoplasmic) Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0016052 - carbohydrate catabolic process; GO_process: GO:0000271 - polysaccharide biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76453.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011833
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0000271 polysaccharide biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011833
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0008184 glycogen phosphorylase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000811
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004645 1,4-alpha-oligoglucan phosphorylase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011833
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Homolog
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265062 CDS
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000014 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000021 malP CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000018 malP CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000032 malP CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000019 malP CDS
Ortholog
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000339 glgP CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0000838 glgP CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0015061 glgP CDS
Person Uncurated Go view Enterobacter sp. 638 AEL-0004646 glgP CDS
Person Approved Go view Escherichia coli 536 (UPEC) AEF-0003560 glgP CDS
Person Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003479 glgP CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000764 glgP CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005654 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080391 glgP CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003918 glgP CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004563 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003911 glgP CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008340 glgP CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009574 glgP CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028446 glgP CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006503 malP_2 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008316 glgP CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004037 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003191 glgP CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003943 glgP CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003875 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003927 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003768 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003707 glgP CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134345 glgP CDS
Person Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003946 glgP CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000470 glgP CDS
Person Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000359 CDS
Person Uncurated Go view Pantoea ananatis AJ13355 AOV-0002986 glgP CDS
Person Uncurated Go view Pantoea ananatis B1-9 APL-0001009 CDS
Person Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003804 glgP CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0000350 CDS
Person Uncurated Go view Pantoea sp. At-9b AGM-0008013 CDS
Person Uncurated Go view Pantoea sp. aB AJV-0000491 CDS
Person Uncurated Go view Pantoea stewartii DC283 ACV-0291473 glgP pseudogene
Person Uncurated Go view Pantoea vagans C9-1 ALK-0006736 glgP CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004048 glgP CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003384 glgP CDS
Person Uncurated Go view Salmonella Typhi CT18 ABX-0114002 glgP CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0085712 glgP CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0100935 glgP CDS
Person Uncurated Go view Serratia proteamaculans 568 AEN-0011643 glgP CDS
Person Approved Go view Shigella boydii 227 ADV-0003743 glgP CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009316 glgP CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004048 glgP CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075617 glgP CDS
Person Approved Go view Shigella flexneri 301 ABT-0089685 glgP CDS
Person Approved Go view Shigella flexneri 8401 BAG-0003651 glgP CDS
Person Approved Go view Shigella sonnei 046 ADD-0004001 glgP CDS
Person Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000118 glgP CDS
Person Uncurated Go view Yersinia enterocolitica 8081 BAH-0011556 glgP CDS
Person Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001132 glgP CDS
Person Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001534 glgP CDS
Person Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000763 glgP CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242215 glgP CDS
Person Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004493 glgP CDS
Person Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003453 glgP CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128550 glgP CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033685 glgP CDS
Person Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004307 glgP CDS
Person Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003954 glgP CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003901 glgP CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3559134 to 3571581
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0011174rtcRCDSforward35582683559866Downstream
ABE-0011176glpRpseudogenecomplement35598483560605Downstream
ABE-0011179glpGCDScomplement35606223561452Downstream
ABE-0011182glpECDScomplement35614973561823Downstream
ABE-0011191glpDCDSforward35620133563518Downstream
ABE-0285606repeat_regionforward35635823563679Downstream
ABE-0285165pseudogenecomplement35637323563791Downstream
ABE-0011194yzgLpseudogenecomplement35637873564005Downstream
ABE-0011198glgPCDScomplement35641343566581Matches
ABE-0011200glgACDScomplement35666003568033Upstream
ABE-0011204glgCCDScomplement35680333569328Upstream
ABE-0011206glgXCDScomplement35693463571319Upstream
ABE-0011209glgBCDScomplement35713163573502Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.