Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011264 (ugpQ) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011264 showshow history
Names
ugpQ JW3414 ECK3433 b3449
Product
glycerophosphodiester phosphodiesterase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3587370 3588113 744 248
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001306
EnteroFam0011264: Trusted threshold=652.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR004129 (IPR004129 (DEPRECATED) Glycerophosphoryl diester phosphodiesterase) Apr 2008
Automated Process Approved IPR030395 (IPR030395 Glycerophosphodiester phosphodiesterase domain) Jul 2018
Automated Process Approved IPR017946 (IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily) Jul 2018
Automated Process Approved PF03009 (PF03009 Glycerophosphoryl diester phosphodiesterase family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006071 glycerol metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0006629 lipid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR030395, IPR017946
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006071 glycerol metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004129
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0008081 phosphoric diester hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR030395, IPR017946
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0008889 glycerophosphodiester phosphodiesterase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004129
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name ugpQ Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW3414 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK3433 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3449 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product glycerophosphodiester phosphodiesterase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Approved alternate product name glycerophosphodiester phosphodiesterase, cytosolic Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0011264: Trusted threshold=652.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001306
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR030395 Glycerophosphodiester phosphodiesterase domain Protein Sequence Similarity - InterPro Domain: IPR030395
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily Protein Sequence Similarity - InterPro Domain: IPR017946
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF03009 Glycerophosphoryl diester phosphodiesterase family Protein Sequence Similarity - PFAM Model Name: PF03009
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR004129 (DEPRECATED) Glycerophosphoryl diester phosphodiesterase Protein Sequence Similarity - InterPro Domain: IPR004129
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 3.1.4.- Published Annotation - Database Name: EC2GO: GO:0008081
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 3.1.4.46 Published Annotation - Swiss-Prot Accession Number: P10908 Feb 2006
Person Uncurated MultiFun 1.7.6 (metabolism; central intermediary metabolism; glycerol metabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11050 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1789858 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P10908 Published Annotation - Swiss-Prot Accession Number: P10908 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P10908 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0011264 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947955 Published Annotation - Entrez Gene Database ID: 947955
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved function enzyme; Central intermediary metabolism: Pool, multipurpose conversions Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006071 - glycerol metabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76474.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0006629 lipid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR030395, IPR017946
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006071 glycerol metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004129
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006071 glycerol metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0008889 glycerophosphodiester phosphodiesterase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004129
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0008081 phosphoric diester hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR030395, IPR017946
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001306 ugpQ CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000664 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001482 ugpQ CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001511 ugpQ CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002054 ugpQ CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001567 ugpQ CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001824 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000590 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004221 ugpQ CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004426 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000323 ugpQ CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0000815 ugpQ CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0009228 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0019161 ugpQ CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000134 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004211 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0306533 ugpQ CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003709 ugpQ CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003370 ugpQ CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001378 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004876 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003580 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007645 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003498 ugpQ CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000747 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005633 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006472 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007544 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080414 ugpQ CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003934 ugpQ CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004582 ugpQ CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007226 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005299 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003927 ugpQ CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008360 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004715 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008100 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006614 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006160 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005263 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009597 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005348 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007412 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005193 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005261 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005102 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0004989 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005591 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028469 ugpQ CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006482 ugpQ CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008335 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004019 ugpQ CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003210 ugpQ CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003922 ugpQ CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004093 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004086 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003855 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003950 ugpQ CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178093 ugpQ CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003786 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003725 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134367 ugpQ CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002643 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003965 ugpQ CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003878 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000478 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003857 ugpQ CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002126 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008969 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002872 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000375 ugpQ CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003000 ugpQ CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000993 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003819 ugpQ CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000336 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008036 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000510 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288473 ugpQ CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006755 ugpQ CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064656 ugpQ CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002551 ugpQ CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002272 ugpQ CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000704 ugpQ CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0004583 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007922 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004273 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004068 ugpQ CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008172 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011067 ugpQ CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011896 ugpQ CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005326 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008223 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005573 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006230 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007074 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007316 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008177 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006672 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003438 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003404 ugpQ CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004434 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008343 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004650 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007813 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004617 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113960 ugpQ CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085694 ugpQ CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004285 ugpQ CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0100996 ugpQ CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005671 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005096 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005139 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000723 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264138 CDS
Person Approved Go view Shigella boydii 227 ADV-0003763 ugpQ CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009293 CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075602 ugpQ CDS
Person Approved Go view Shigella flexneri 301 ABT-0089700 ugpQ CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003666 ugpQ CDS
Person Approved Go view Shigella sonnei 046 ADD-0004022 ugpQ CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0003278 ugpQ CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001888 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000765 ugpQ CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002561 ugpQ_2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001654 ugpQ CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001975 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242095 CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007774 ugpQ CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000297 ugpQ CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007581 ugpQ CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003585 ugpQ CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128047 ugpQ CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008149 ugpQ CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006537 ugpQ CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0004047 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008532 ugpQ CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007528 ugpQ CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030045 ugpQ CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006983 ugpQ CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000225 ugpQ CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004082 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008089 ugpQ CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004195 ugpQ CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000260 ugpQ CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000310 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004692 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0004174 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001256 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3582370 to 3593113
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0011244yhhZCDSforward35818633583041Downstream
ABE-0011246yrhApseudogeneforward35830383583427(Interval #1) Downstream
ABE-0011247mobile_elementforward35834283584195Downstream
ABE-0011249insA-6CDSforward35834833583758Downstream
ABE-0011251insB-6CDSforward35836773584180Downstream
ABE-0011246yrhApseudogeneforward35842053584309(Interval #2) Downstream
ABE-0285194yrhDCDSforward35844043584559Downstream
ABE-0011255yrhBCDSforward35847593585043Downstream
ABE-0011257ggtCDScomplement35850813586823Downstream
ABE-0011262yhhACDSforward35869433587383Overlaps Downstream
ABE-0011264ugpQCDScomplement35873703588113Matches
ABE-0011266ugpCCDScomplement35881103589180Overlaps Upstream
ABE-0011270ugpECDScomplement35891823590027Upstream
ABE-0011272ugpACDScomplement35900243590911Upstream
ABE-0285607repeat_regionforward35909333590998Upstream
ABE-0011274ugpBCDScomplement35910093592325Upstream
ABE-0285608repeat_regionforward35925643592662Upstream
ABE-0011282livFCDScomplement35927243593437Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.