Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011266 (ugpC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011266 showshow history
Names
ugpC JW3415 ECK3434 b3450
Product
ATP-binding component of an ABC superfamily sn-glycerol-3-phosphate transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3588110 3589180 1071 357
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001307
EnteroFam0011266: Trusted threshold=937.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR008995 (IPR008995 Molybdate/tungstate binding, C-terminal) Apr 2008
Automated Process Approved IPR003439 (IPR003439 ABC transporter-like) Apr 2008
Automated Process Approved IPR003593 (IPR003593 AAA+ ATPase domain) Apr 2008
Automated Process Approved IPR005116 (IPR005116 Transport-associated OB, type 1) Apr 2008
Automated Process Approved IPR013611 (IPR013611 Transport-associated OB, type 2) Jul 2018
Automated Process Approved IPR027417 (IPR027417 P-loop containing nucleoside triphosphate hydrolase) Jul 2018
Automated Process Approved PF08402 (PF08402 TOBE domain) Jul 2018
Automated Process Approved PF00005 (PF00005 ABC transporter) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR013611
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0008654 phospholipid biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0006071 glycerol metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009060 aerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0043190 ATP-binding cassette (ABC) transporter complex GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR013611
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR013611
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Uncurated name ugpC Published Sequence Analysis - PubMed ID: 3062310
Reference: Escherichia coli K-12 		Sep 2021
Person Approved synonym ECK3434 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW3415 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3450 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product ATP-binding component of an ABC superfamily sn-glycerol-3-phosphate transporter Published Sequence Analysis - PubMed ID: 3062310
Reference: Escherichia coli K-12 		Sep 2021
Person Uncurated alternate product name sn-glycerol 3-phosphate transport protein (ABC superfamily, atp_bind) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name ATP-binding component of sn-glycerol 3-phosphate transport system Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Automated Process Approved alternate product name glycerol-3-phosphate transporter subunit Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved alternate product name glycerol-3-phosphate transporter subunit; ATP-binding component of ABC superfamily Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Jan 2007
Protein Family
Person Approved EnteroFam EnteroFam0011266: Trusted threshold=937.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001307
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR013611 Transport-associated OB, type 2 Protein Sequence Similarity - InterPro Domain: IPR013611
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR027417 P-loop containing nucleoside triphosphate hydrolase Protein Sequence Similarity - InterPro Domain: IPR027417
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF08402 TOBE domain Protein Sequence Similarity - PFAM Model Name: PF08402
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR003593 AAA+ ATPase domain Protein Sequence Similarity - InterPro Domain: IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR005116 Transport-associated OB, type 1 Protein Sequence Similarity - InterPro Domain: IPR005116
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00005 ABC transporter Protein Sequence Similarity - PFAM Model Name: PF00005
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR008995 Molybdate/tungstate binding, C-terminal Protein Sequence Similarity - InterPro Domain: IPR008995
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR003439 ABC transporter-like Protein Sequence Similarity - InterPro Domain: IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated EC number 3.6.3.- Protein Sequence Similarity - InterPro Domain: IPR008995
Reference: Escherichia coli K-12 MG1655 		Dec 2008
Automated Process Uncurated EC number 3.6.1.3 Published Annotation - Database Name: EC2GO: GO:0016887
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 1.3.7 (metabolism; energy metabolism, carbon; anaerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.6 (metabolism; central intermediary metabolism; glycerol metabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.6 (metabolism; energy metabolism, carbon; aerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.78 (transport; substrate; glycerol-3-P) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.A.1.a (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily ATP binding cytoplasmic component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.6.1 (metabolism; macromolecules (cellular constituent) biosynthesis; phospholipid) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.4 (metabolism; building block biosynthesis; fatty acid and phosphatidic acid) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:87082267 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P10907 Published Annotation - Swiss-Prot Accession Number: P10907 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P10907 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947953 Published Annotation - Entrez Gene Database ID: 947953
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref ASAP:ABE-0011266 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11048 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Transport of small molecules: Carbohydrates, organic acids, alcohols Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note ATP-binding component of sn-glycerol 3-phosphate transport system; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0009060 - aerobic respiration; GO_process: GO:0009061 - anaerobic respiration; GO_process: GO:0006071 - glycerol metabolic process; GO_process: GO:0008654 - phospholipid biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76475.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.12
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0009060 aerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR013611
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0008654 phospholipid biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0006071 glycerol metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0043190 ATP-binding cassette (ABC) transporter complex GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR013611
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR013611
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001307 ugpC CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000663 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001923 ugpC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001925 ugpC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0003035 ugpC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001928 ugpC CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001825 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000589 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004222 ugpC CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004425 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000322 ugpC_1 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000814 ugpC_1 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0009229 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0019160 ugpC CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000133 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004210 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0306535 ugpC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003710 ugpC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003371 ugpC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001379 ugpC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004875 ugpC CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003581 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007644 ugpC CDS
Person Uncurated Go view Escherichia coli ABU 83972 (UPEC) ANS-0014195 ugpC CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003499 ugpC CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000746 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005632 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007543 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080415 ugpC CDS
Person Uncurated Go view Escherichia coli CI5 (UPEC) AZX-0003631 ugpC CDS
Person Uncurated Go view Escherichia coli D i2 (UPEC) AZZ-0003930 ugpC CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003935 ugpC CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004583 ugpC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007227 ugpC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005298 ugpC CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003928 ugpC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008361 ugpC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004716 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008101 ugpC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006615 ugpC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006161 ugpC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005262 ugpC CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009598 ugpC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005347 ugpC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007413 ugpC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005194 ugpC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005262 ugpC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005103 ugpC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0004990 ugpC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005592 ugpC CDS
Person Uncurated Go view Escherichia coli EC958 (UPEC) BCU-0003940 ugpC CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028470 ugpC CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006481 ugpC_2 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008336 ugpC CDS
Person Uncurated Go view Escherichia coli IAI39 (UPEC) AIB-0004081 ugpC CDS
Automated Process Approved Go view Escherichia coli J96 (UPEC) CQK-0004018 ugpC CDS
Person Uncurated Go view Escherichia coli JJ1886 (UPEC) BCY-0003839 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003211 ugpC CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003921 ugpC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004094 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004087 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003854 CDS
Person Uncurated Go view Escherichia coli NA114 (UPEC) BDB-0003642 ugpC CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178094 ugpC CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003787 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003726 ugpC CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134368 ugpC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002644 CDS
Person Uncurated Go view Escherichia coli UMN026 (UPEC) AIA-0003973 ugpC CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003966 ugpC CDS
Person Uncurated Go view Escherichia coli YD786 (UPEC) BFM-0003208 ugpC CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003877 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000479 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003858 ugpC CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002127 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008970 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002873 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000376 ugpC CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003001 ugpC CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000992 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003820 ugpC CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000335 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008035 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000511 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288472 ugpC CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006756 ugpC CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064657 ugpC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002558 ugpC CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0002273 ugpC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000705 ugpC CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0004582 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007923 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004272 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004069 ugpC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008173 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011069 ugpC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011891 ugpC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005325 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008224 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005574 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006229 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007075 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007317 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008178 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006671 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003439 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003405 ugpC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004435 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008344 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004649 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007814 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004618 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113956 ugpC CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085693 ugpC CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004286 ugpC CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0100998 ugpC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005670 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005095 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005140 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000724 CDS
Person Approved Go view Shigella boydii 227 ADV-0003764 ugpC CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009292 ugpC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003451 ugpC CDS
Person Uncurated Go view Shigella flexneri 2457T ABQ-0075601 ugpC pseudogene
Person Approved Go view Shigella sonnei 046 ADD-0004023 ugpC CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001624 VC1552 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001887 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000761 ugpC CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002560 ugpC_2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001655 ugpC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001976 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242093 ugpC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007775 ugpC CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000296 ugpC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007582 ugpC CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003584 ugpC CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128048 ugpC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008148 ugpC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006536 ugpC CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0004048 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008531 ugpC CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007527 ugpC CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030044 ugpC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006982 ugpC CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000224 ugpC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004083 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008090 ugpC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004194 ugpC CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000259 ugpC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000309 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004693 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0004180 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001255 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21213mutantTn5 InsertionRequest the StrainABE-0011266ugpCugpC::Tn5KAN-I-SceI at position 632 in Plus orientation ,- pKD465Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3583110 to 3594180
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0011246yrhApseudogeneforward35830383583427(Interval #1) Downstream
ABE-0011247mobile_elementforward35834283584195Downstream
ABE-0011249insA-6CDSforward35834833583758Downstream
ABE-0011251insB-6CDSforward35836773584180Downstream
ABE-0011246yrhApseudogeneforward35842053584309(Interval #2) Downstream
ABE-0285194yrhDCDSforward35844043584559Downstream
ABE-0011255yrhBCDSforward35847593585043Downstream
ABE-0011257ggtCDScomplement35850813586823Downstream
ABE-0011262yhhACDSforward35869433587383Downstream
ABE-0011264ugpQCDScomplement35873703588113Overlaps Downstream
ABE-0011266ugpCCDScomplement35881103589180Matches
ABE-0011270ugpECDScomplement35891823590027Upstream
ABE-0011272ugpACDScomplement35900243590911Upstream
ABE-0285607repeat_regionforward35909333590998Upstream
ABE-0011274ugpBCDScomplement35910093592325Upstream
ABE-0285608repeat_regionforward35925643592662Upstream
ABE-0011282livFCDScomplement35927243593437Upstream
ABE-0011284livGCDScomplement35934393594206Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.