Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011270 (ugpE) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011270 showshow history
Names
ugpE JW3416 ECK3435 b3451
Product
membrane component of an ABC superfamily sn-glycerol-3-phosphate transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3589182 3590027 846 282
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001308
EnteroFam0011270: Trusted threshold=749.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR000515 (IPR000515 ABC transporter type 1, transmembrane domain MetI-like) Apr 2008
Automated Process Approved IPR030165 (IPR030165 sn-glycerol-3-phosphate transport system permease protein UgpE) Jul 2018
Automated Process Approved IPR035906 (IPR035906 MetI-like superfamily) Jul 2018
Automated Process Approved PF00528 (PF00528 Binding-protein-dependent transport system inner membrane component) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000515
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0009060 aerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0015794 glycerol-3-phosphate transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR030165
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0001407 glycerophosphodiester transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR030165
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0008654 phospholipid biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0006071 glycerol metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0055052 ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR030165
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005887 integral component of plasma membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR030165
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Uncurated name ugpE Published Sequence Analysis - PubMed ID: 3062310
Reference: Escherichia coli K-12 		Sep 2021
Person Approved synonym JW3416 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK3435 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3451 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product membrane component of an ABC superfamily sn-glycerol-3-phosphate transporter Published Sequence Analysis - PubMed ID: 3062310
Reference: Escherichia coli K-12 		Sep 2021
Person Approved alternate product name sn-glycerol 3-phosphate transport system, integral membrane protein Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name sn-glycerol 3-phosphate transport protein (ABC superfamily, membrane) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name glycerol-3-phosphate transporter subunit; membrane component of ABC superfamily Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Jan 2007
Automated Process Approved alternate product name glycerol-3-phosphate transporter subunit Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Person Approved EnteroFam EnteroFam0011270: Trusted threshold=749.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001308
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR030165 sn-glycerol-3-phosphate transport system permease protein UgpE Protein Sequence Similarity - InterPro Domain: IPR030165
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00528 Binding-protein-dependent transport system inner membrane component Protein Sequence Similarity - PFAM Model Name: PF00528
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR035906 MetI-like superfamily Protein Sequence Similarity - InterPro Domain: IPR035906
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000515 ABC transporter type 1, transmembrane domain MetI-like Protein Sequence Similarity - InterPro Domain: IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 1.3.7 (metabolism; energy metabolism, carbon; anaerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.6 (metabolism; energy metabolism, carbon; aerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.6 (metabolism; central intermediary metabolism; glycerol metabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.A.1.m (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily, membrane component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.78 (transport; substrate; glycerol-3-P) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.4 (metabolism; building block biosynthesis; fatty acid and phosphatidic acid) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.6.1 (metabolism; macromolecules (cellular constituent) biosynthesis; phospholipid) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1789860 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P10906 Published Annotation - Swiss-Prot Accession Number: P10906 Jan 2005
Automated Process Approved db xref GeneID:947959 Published Annotation - Entrez Gene Database ID: 947959
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P10906 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0011270 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11049 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Transport of small molecules: Carbohydrates, organic acids, alcohols Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note sn-glycerol 3-phosphate transport system, integral membrane protein; membrane component of ABC superfamily; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0009060 - aerobic respiration; GO_process: GO:0009061 - anaerobic respiration; GO_process: GO:0006071 - glycerol metabolic process; GO_process: GO:0008654 - phospholipid biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76476.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000515
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0015794 glycerol-3-phosphate transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR030165
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0008654 phospholipid biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009060 aerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0006071 glycerol metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0001407 glycerophosphodiester transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR030165
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0055052 ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR030165
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005887 integral component of plasma membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR030165
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001308 ugpE CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000662 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001715 ugpE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001804 ugpE CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002837 ugpE CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001862 ugpE CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001826 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000588 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004223 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004424 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000321 ycjP_1 CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0000813 ycjP_1 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0009230 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0019159 ugpE CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000132 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004209 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0306540 ugpE CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003711 ugpE CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003372 ugpE CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001380 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004874 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003582 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007643 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003500 ugpE CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000745 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005631 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006474 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007542 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080416 ugpE CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003936 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004584 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007228 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005297 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003929 ugpE CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008362 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004717 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008102 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006616 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006162 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005261 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009599 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005346 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007414 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005195 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005263 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005104 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0004991 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005593 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028471 ugpE CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006480 lacG CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008337 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004017 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003212 ugpE CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003920 ugpE CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004095 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004088 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003853 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003788 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003727 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134369 ugpE CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002645 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003967 ugpE CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003876 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000480 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003859 ugpE CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002128 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008971 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002874 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000377 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003002 ugpE CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000991 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003821 ugpE CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000334 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008034 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000512 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0288471 ugpE CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006757 ugpE CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064658 ugpE CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002552 ugpE CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0004329 ugpE CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000706 ugpE CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0004581 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000675 ugpE CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007924 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004271 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004070 ugpE CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008174 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011074 ugpE CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011886 ugpE CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005324 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008225 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005575 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006228 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007076 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007318 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008179 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006670 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003440 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003406 ugpE CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004436 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008345 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004648 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007815 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004619 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113953 ugpE CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085692 ugpE CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004287 ugpE CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0101001 ugpE CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005669 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005094 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005141 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000725 CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009291 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003450 CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004076 ugpE CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075600 ugpE CDS
Person Approved Go view Shigella flexneri 301 ABT-0089702 ugpE CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003668 ugpE CDS
Person Approved Go view Shigella sonnei 046 ADD-0004024 ugpE CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0003280 CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001623 VC1551 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001886 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000757 ugpE CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002559 ugpE CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001656 ugpE CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001977 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242085 ugpE CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007776 ugpE CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000295 ugpE CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007583 ugpE CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003583 ugpE CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128052 ugpE CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008147 ugpE CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006535 ugpE CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0004049 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008530 ugpE CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007526 ugpE CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030043 ugpE CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006981 ugpE CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000223 ugpE CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004084 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008091 ugpE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004193 ugpE CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000258 ugpE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000308 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004694 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0004191 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001254 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21214mutantTn5 InsertionRequest the StrainABE-0011270ugpEugpE::Tn5KAN-I-SceI at position 160 in Minus orientation ,- pKD465Blattner Laboratory
FB21215mutantTn5 InsertionRequest the StrainABE-0011270ugpEugpE::Tn5KAN-I-SceI at position 160 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3584182 to 3595027
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0011247mobile_elementforward35834283584195Downstream
ABE-0011246yrhApseudogeneforward35842053584309(Interval #2) Downstream
ABE-0285194yrhDCDSforward35844043584559Downstream
ABE-0011255yrhBCDSforward35847593585043Downstream
ABE-0011257ggtCDScomplement35850813586823Downstream
ABE-0011262yhhACDSforward35869433587383Downstream
ABE-0011264ugpQCDScomplement35873703588113Downstream
ABE-0011266ugpCCDScomplement35881103589180Downstream
ABE-0011270ugpECDScomplement35891823590027Matches
ABE-0011272ugpACDScomplement35900243590911Overlaps Upstream
ABE-0285607repeat_regionforward35909333590998Upstream
ABE-0011274ugpBCDScomplement35910093592325Upstream
ABE-0285608repeat_regionforward35925643592662Upstream
ABE-0011282livFCDScomplement35927243593437Upstream
ABE-0011284livGCDScomplement35934393594206Upstream
ABE-0011287livMCDScomplement35942033595480Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.