Escherichia coli K-12 MG1655
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011272 (ugpA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011272 showshow history
Names
ugpA JW3417 ECK3436 psiC psiB b3452
Product
membrane component of an ABC superfamily sn-glycerol-3-phosphate transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3590024 3590911 888 296
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001309
EnteroFam0011272: Trusted threshold=791.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043).
Jan 2006
Automated Process Approved IPR000515 (IPR000515 ABC transporter type 1, transmembrane domain MetI-like) Apr 2008
Automated Process Approved IPR035906 (IPR035906 MetI-like superfamily) Jul 2018
Automated Process Approved PF00528 (PF00528 Binding-protein-dependent transport system inner membrane component) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009060 aerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000515
Reference: Escherichia coli K-12 MG1655
Jul 2018
Person Uncurated GO biological process GO:0008654 phospholipid biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Uncurated GO biological process GO:0006071 glycerol metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655
Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Uncurated name ugpA Published Sequence Analysis - PubMed ID: 3062310
Reference: Escherichia coli K-12
Sep 2021
Person Approved synonym psiC Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym JW3417 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK3436 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym psiB Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved locus tag b3452 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product membrane component of an ABC superfamily sn-glycerol-3-phosphate transporter Published Sequence Analysis - PubMed ID: 3062310
Reference: Escherichia coli K-12
Sep 2021
Automated Process Approved alternate product name glycerol-3-phosphate transporter subunit Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved alternate product name sn-glycerol 3-phosphate transport system, integral membrane protein Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Jan 2006
Person Uncurated alternate product name sn-glycerol 3-phosphate transport protein (ABC superfamily, membrane) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name glycerol-3-phosphate transporter subunit; membrane component of ABC superfamily Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655
Jan 2007
Protein Family
Person Approved EnteroFam EnteroFam0011272: Trusted threshold=791.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001309
Reference: EnteroFams
Jan 2006
Automated Process Approved protein family PF00528 Binding-protein-dependent transport system inner membrane component Protein Sequence Similarity - PFAM Model Name: PF00528
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR035906 MetI-like superfamily Protein Sequence Similarity - InterPro Domain: IPR035906
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR000515 ABC transporter type 1, transmembrane domain MetI-like Protein Sequence Similarity - InterPro Domain: IPR000515
Reference: Escherichia coli K-12 MG1655
Apr 2008
Other
Person Uncurated MultiFun 1.6.1 (metabolism; macromolecules (cellular constituent) biosynthesis; phospholipid) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.6 (metabolism; central intermediary metabolism; glycerol metabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.7 (metabolism; energy metabolism, carbon; anaerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.A.1.m (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily, membrane component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.6 (metabolism; energy metabolism, carbon; aerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.78 (transport; substrate; glycerol-3-P) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.4 (metabolism; building block biosynthesis; fatty acid and phosphatidic acid) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GI:1789861 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved db xref UniProtKB:P10905 Published Annotation - Swiss-Prot Accession Number: P10905 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P10905 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GeneID:947957 Published Annotation - Entrez Gene Database ID: 947957
Reference: Escherichia coli K-12 MG1655
Jun 2009
Automated Process Approved db xref ASAP:ABE-0011272 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref EcoGene:EG11046 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved function transport; Transport of small molecules: Carbohydrates, organic acids, alcohols Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Automated Process Approved note sn-glycerol 3-phosphate transport system, integral membrane protein; membrane component of ABC superfamily; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0009060 - aerobic respiration; GO_process: GO:0009061 - anaerobic respiration; GO_process: GO:0006071 - glycerol metabolic process; GO_process: GO:0008654 - phospholipid biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved protein id AAC76477.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655
Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655
Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655
Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0009060 aerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000515
Reference: Escherichia coli K-12 MG1655
Jul 2018
Person Uncurated GO biological process GO:0008654 phospholipid biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0006071 glycerol metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655
Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001309 ugpA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000661 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001754 ugpA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001767 ugpA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002835 ugpA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001867 ugpA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001827 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000587 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004224 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004423 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000320 ugpA_1 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000812 ugpA_1 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0009231 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0046843 ugpA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000131 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004208 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0306544 ugpA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003712 ugpA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003373 ugpA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001381 ugpA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004873 ugpA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003583 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007642 ugpA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003501 ugpA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000744 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005630 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006475 ugpA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007541 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080417 ugpA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003937 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004585 ugpA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007229 ugpA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005296 ugpA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003930 ugpA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008363 ugpA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004718 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008103 ugpA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006617 ugpA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006163 ugpA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005260 ugpA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009600 ugpA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005345 ugpA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007415 ugpA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005196 ugpA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005264 ugpA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005105 ugpA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0004992 ugpA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005594 ugpA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028472 ugpA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006479 ugpA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008338 ugpA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004016 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003213 ugpA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003919 ugpA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004096 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004089 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003852 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178097 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003789 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003728 ugpA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134370 ugpA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002646 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003968 ugpA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003875 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000481 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003860 ugpA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002129 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008973 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002875 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000378 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003003 ugpA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000990 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003822 ugpA CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0000333 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008033 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000513 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0288470 ugpA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006758 ugpA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064659 ugpA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002547 ugpA CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0004330 ugpA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000707 ugpA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0004580 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000676 ugpA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007925 ugpA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004270 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004071 ugpA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008175 ugpA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011079 ugpA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011882 ugpA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005323 ugpA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008226 ugpA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005576 ugpA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006227 ugpA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007077 ugpA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007319 ugpA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008180 ugpA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006669 ugpA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003441 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003407 ugpA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004437 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008346 ugpA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004647 ugpA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007816 ugpA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004620 ugpA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113950 ugpA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085691 ugpA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004288 ugpA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0101004 ugpA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005668 ugpA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005093 ugpA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005142 ugpA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000726 CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009290 ugpA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003449 ugpA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004077 ugpA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075599 ugpA CDS
Person Approved Go view Shigella flexneri 301 ABT-0089703 ugpA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003669 ugpA CDS
Person Approved Go view Shigella sonnei 046 ADD-0004025 ugpA CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0003281 CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001622 VC1550 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001885 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000753 ugpA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002558 ugpA_2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001657 ugpA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001978 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242078 ugpA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007777 ugpA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000294 ugpA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007584 ugpA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003582 ugpA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128062 ugpA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008146 ugpA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006534 ugpA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0004050 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008529 ugpA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007525 ugpA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030042 ugpA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006980 ugpA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000222 ugpA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004085 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008092 ugpA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004192 ugpA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000257 ugpA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000307 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004695 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0004197 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001253 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)

Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21216mutantTn5 InsertionRequest the StrainABE-0011272ugpAugpA::Tn5KAN-I-SceI at position 437 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3585024 to 3595911
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0011255yrhBCDSforward35847593585043Downstream
ABE-0011257ggtCDScomplement35850813586823Downstream
ABE-0011262yhhACDSforward35869433587383Downstream
ABE-0011264ugpQCDScomplement35873703588113Downstream
ABE-0011266ugpCCDScomplement35881103589180Downstream
ABE-0011270ugpECDScomplement35891823590027Overlaps Downstream
ABE-0011272ugpACDScomplement35900243590911Matches
ABE-0285607repeat_regionforward35909333590998Upstream
ABE-0011274ugpBCDScomplement35910093592325Upstream
ABE-0285608repeat_regionforward35925643592662Upstream
ABE-0011282livFCDScomplement35927243593437Upstream
ABE-0011284livGCDScomplement35934393594206Upstream
ABE-0011287livMCDScomplement35942033595480Upstream
ABE-0011290livHCDScomplement35954773596403Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.