Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011274 (ugpB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011274 showshow history
Names
ugpB JW3418 ECK3437 psiC psiB b3453
Product
periplasmic-binding component of an ABC superfamily sn-glycerol-3-phosphate transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3591009 3592325 1317 439
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006061 (IPR006061 Solute-binding family 1, conserved site) Apr 2008
Automated Process Approved IPR006059 (IPR006059 Bacterial extracellular solute-binding protein) Apr 2008
Automated Process Approved PF13416 (PF13416 Bacterial extracellular solute-binding protein) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006061
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009060 aerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0008654 phospholipid biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0006071 glycerol metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006061
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Uncurated name ugpB Published Sequence Analysis - PubMed ID: 3062310
Reference: Escherichia coli K-12 		Sep 2021
Person Approved synonym psiB Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym JW3418 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK3437 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym psiC Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved locus tag b3453 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product periplasmic-binding component of an ABC superfamily sn-glycerol-3-phosphate transporter Published Sequence Analysis - PubMed ID: 3062310
Reference: Escherichia coli K-12 		Sep 2021
Automated Process Approved alternate product name glycerol-3-phosphate transporter subunit Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved alternate product name sn-glycerol 3-phosphate transport system; periplasmic binding protein Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name sn-glycerol 3-phosphate transport protein (ABC superfamily, peri_bind) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name periplasmic-binding component of an ABC superfamily glycerol-3-phosphate transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2008
Protein Family
Automated Process Approved protein family PF13416 Bacterial extracellular solute-binding protein Protein Sequence Similarity - PFAM Model Name: PF13416
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006059 Bacterial extracellular solute-binding protein Protein Sequence Similarity - InterPro Domain: IPR006059
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006061 Solute-binding family 1, conserved site Protein Sequence Similarity - InterPro Domain: IPR006061
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 1.3.7 (metabolism; energy metabolism, carbon; anaerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.6 (metabolism; central intermediary metabolism; glycerol metabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.6.1 (metabolism; macromolecules (cellular constituent) biosynthesis; phospholipid) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.2 (location of gene products; periplasmic space) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.6 (metabolism; energy metabolism, carbon; aerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.78 (transport; substrate; glycerol-3-P) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.A.1.p (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily, periplasmic binding component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.4 (metabolism; building block biosynthesis; fatty acid and phosphatidic acid) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947962 Published Annotation - Entrez Gene Database ID: 947962
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0AG80 Published Annotation - Swiss-Prot Accession Number: P0AG80 Jan 2006
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AG80 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1789862 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11047 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0011274 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Transport of small molecules: Carbohydrates, organic acids, alcohols Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note sn-glycerol 3-phosphate transport system; periplasmic binding protein; periplasmic-binding component of ABC superfamily; GO_component: GO:0042597 - periplasmic space; GO_process: GO:0009060 - aerobic respiration; GO_process: GO:0009061 - anaerobic respiration; GO_process: GO:0006071 - glycerol metabolic process; GO_process: GO:0008654 - phospholipid biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76478.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Periplasmic Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0006071 glycerol metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006061
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009060 aerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0008654 phospholipid biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006061
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000660 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001799 ugpB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001815 ugpB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002836 ugpB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001658 ugpB CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001828 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000586 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004225 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004422 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000319 ugpB CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000811 ugpB CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0009232 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0017679 ugpB CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000130 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004207 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0306548 ugpB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003713 ugpB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003374 ugpB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001382 ugpB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004872 ugpB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003584 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007641 ugpB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003502 ugpB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000743 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005628 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006476 ugpB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007540 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080418 ugpB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003938 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004586 ugpB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007230 ugpB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005295 ugpB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003931 ugpB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008364 ugpB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004719 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008104 ugpB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006618 ugpB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006164 ugpB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005259 ugpB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009601 ugpB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005344 ugpB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007416 ugpB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005197 ugpB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005265 ugpB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005106 ugpB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0004993 ugpB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005595 ugpB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028473 ugpB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006478 ugpB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008339 ugpB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004015 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003214 ugpB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003918 ugpB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004097 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004090 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003851 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003954 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178098 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003790 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003729 ugpB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134371 ugpB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002647 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003969 ugpB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003874 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000482 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003861 ugpB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002130 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008974 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002876 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000379 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003004 ugpB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000989 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003823 ugpB CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000332 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008032 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000514 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288469 ugpB CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006759 ugpB CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064660 ugpB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002553 ugpB CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002274 ugpB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000708 ugpB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0004578 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007926 ugpB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004269 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004074 ugpB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008176 ugpB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011083 ugpB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011877 ugpB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005322 ugpB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008227 ugpB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005577 ugpB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006226 ugpB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007078 ugpB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007320 ugpB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008181 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006668 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003442 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003408 ugpB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004438 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008347 ugpB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004646 ugpB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007817 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004621 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113947 ugpB CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0085690 ugpB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004289 ugpB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0101008 ugpB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005667 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005092 ugpB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005143 ugpB CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000727 CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009289 ugpB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003448 ugpB CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004078 ugpB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075598 ugpB CDS
Person Approved Go view Shigella flexneri 301 ABT-0089704 ugpB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003670 ugpB CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001621 VC1549 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001884 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000749 ugpB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002556 mdxE CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001658 ugpB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001979 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242076 ugpB5 CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007778 ugpB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000292 ugpB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007585 ugpB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003581 ugpB CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128071 ugpB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008145 ugpB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006533 ugpB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0004051 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008528 ugpB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007524 ugpB CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030041 ugpB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006979 ugpB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000220 ugpB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004086 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008093 ugpB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004191 ugpB CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000256 ugpB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004696 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0004203 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001252 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21217mutantTn5 InsertionRequest the StrainABE-0011274ugpBugpB::Tn5KAN-I-SceI at position 318 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3586009 to 3597325
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0011257ggtCDScomplement35850813586823Downstream
ABE-0011262yhhACDSforward35869433587383Downstream
ABE-0011264ugpQCDScomplement35873703588113Downstream
ABE-0011266ugpCCDScomplement35881103589180Downstream
ABE-0011270ugpECDScomplement35891823590027Downstream
ABE-0011272ugpACDScomplement35900243590911Downstream
ABE-0285607repeat_regionforward35909333590998Downstream
ABE-0011274ugpBCDScomplement35910093592325Matches
ABE-0285608repeat_regionforward35925643592662Upstream
ABE-0011282livFCDScomplement35927243593437Upstream
ABE-0011284livGCDScomplement35934393594206Upstream
ABE-0011287livMCDScomplement35942033595480Upstream
ABE-0011290livHCDScomplement35954773596403Upstream
ABE-0011292livKCDScomplement35964513597560Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.