Escherichia coli K-12 MG1655
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011282 (livF) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011282 showshow history
Names
livF JW3419 ECK3438 b3454
Product
ATP-binding component of an ABC superfamily branched chain amino acid/phenylalanine transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3592724 3593437 714 238
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001310
EnteroFam0011282: Trusted threshold=674.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043).
Jan 2006
Automated Process Approved IPR003439 (IPR003439 ABC transporter-like) Apr 2008
Automated Process Approved IPR003593 (IPR003593 AAA+ ATPase domain) Apr 2008
Automated Process Approved IPR027417 (IPR027417 P-loop containing nucleoside triphosphate hydrolase) Jul 2018
Automated Process Approved PF00005 (PF00005 ABC transporter) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009098 leucine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009063 cellular amino acid catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655
Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name livF Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655
Sep 2007
Person Approved synonym JW3419 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK3438 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3454 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product ATP-binding component of an ABC superfamily branched chain amino acid/phenylalanine transporter Published Annotation - EcoCyc Accession Number: EG10536
Reference: Escherichia coli K-12 MG1655
Oct 2021
Person Approved alternate product name ATP-binding component of leucine transport Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Jan 2006
Person Uncurated alternate product name high-affinity branched-chain amino acid transport protein (ABC superfamily, atp_bind) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name leucine/isoleucine/valine transporter subunit; ATP-binding component of ABC superfamily Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655
Jan 2007
Automated Process Approved alternate product name leucine/isoleucine/valine transporter subunit Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Protein Family
Person Approved EnteroFam EnteroFam0011282: Trusted threshold=674.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001310
Reference: EnteroFams
Jan 2006
Automated Process Approved protein family IPR003439 ABC transporter-like Protein Sequence Similarity - InterPro Domain: IPR003439
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR003593 AAA+ ATPase domain Protein Sequence Similarity - InterPro Domain: IPR003593
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family PF00005 ABC transporter Protein Sequence Similarity - PFAM Model Name: PF00005
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR027417 P-loop containing nucleoside triphosphate hydrolase Protein Sequence Similarity - InterPro Domain: IPR027417
Reference: Escherichia coli K-12 MG1655
Jul 2018
Other
Automated Process Uncurated EC number 3.6.1.3 Published Annotation - Database Name: EC2GO: GO:0016887
Reference: Escherichia coli K-12 MG1655
Jul 2018
Person Uncurated MultiFun 1.5.1.19 (metabolism; building block biosynthesis; amino acids; leucine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.A.1.a (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily ATP binding cytoplasmic component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.108 (transport; substrate; L-leucine/L-valine/L-iso-leucine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.1.18 (metabolism; building block biosynthesis; amino acids; isoleucine/valine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.1.3 (metabolism; carbon utilization; amino acids) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GeneID:947961 Published Annotation - Entrez Gene Database ID: 947961
Reference: Escherichia coli K-12 MG1655
Jun 2009
Person Approved db xref UniProtKB:P22731 Published Annotation - Swiss-Prot Accession Number: P22731 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P22731 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GI:87082268 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref ASAP:ABE-0011282 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref EcoGene:EG10536 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved function transport; Transport of small molecules: Amino acids, amines Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Automated Process Approved note ATP-binding component of leucine transport; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0009063 - cellular amino acid catabolic process; GO_process: GO:0009098 - leucine biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved protein id AAC76479.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 7.88
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655
Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655
Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655
Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0009063 cellular amino acid catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009098 leucine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655
Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001310 livF CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000659 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001591 livF CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001701 livF CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002025 livF CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001710 livF CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001832 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000574 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004226 livF CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004421 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000318 livF_1 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000809 livF_1 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0009247 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017660 livF CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000108 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004206 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0306552 livF CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003714 livF CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003377 livF CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001385 livF CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004870 livF CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003585 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007639 livF CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003503 livF CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000742 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005627 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006477 livF CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007538 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080420 livF CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003940 livF CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004588 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007232 livF CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005294 livF CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003932 livF CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008366 livF CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004721 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008108 livF CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006621 livF CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006167 livF CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005256 livF CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009605 livF CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005341 livF CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007419 livF CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005200 livF CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005268 livF CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005109 livF CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0004996 livF CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005598 livF CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028476 livF CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006477 livF CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008341 livF CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004012 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003215 livF CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003917 livF CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004098 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004091 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003850 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003956 livF CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178099 livF CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003791 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003733 livF CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134373 livF CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002649 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003970 livF CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003873 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000483 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003864 livF CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002131 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008986 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002877 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000380 livF CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003005 livF CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000988 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003824 livF CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000331 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008031 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000515 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288468 livF CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006760 livF CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064675 livF CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002574 livF CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0004332 livF CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000723 livF CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0004557 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0146137 livF CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004185 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007929 livF CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004268 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004077 livF CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008179 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011092 livF CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011869 livF CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005319 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008230 livF CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005580 livF CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006223 livF CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007081 livF CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007323 livF CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008184 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006664 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003444 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003410 livF CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004441 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008350 livF CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004642 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007820 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004624 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113941 livF CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085688 livF CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004292 livF CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0101017 livF CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005664 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005089 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005146 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000729 CDS
Person Approved Go view Shigella boydii 227 ADV-0003767 livF CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009287 livF CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003445 livF CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004080 livF CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075596 livF CDS
Person Approved Go view Shigella flexneri 301 ABT-0089705 livF CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003671 livF CDS
Person Approved Go view Shigella sonnei 046 ADD-0004027 livF CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0003283 livF CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0001126 livF CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001877 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000730 livF CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002549 livF_3 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001665 livF CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001989 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242064 livF CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007787 livF CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000278 livF CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007594 livF CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003573 livF CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128084 livF CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008137 livF CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006525 livF CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0004058 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008520 livF CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007516 livF CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030033 livF CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006970 livF CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000206 livF CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004100 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008101 livF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004183 livF CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000248 livF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000292 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004711 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0004206 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001251 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)

Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21218mutantTn5 InsertionRequest the StrainABE-0011282livFlivF::Tn5KAN-I-SceI at position 355 in Plus orientation ,+ pKD460Blattner Laboratory
FB21219mutantTn5 InsertionRequest the StrainABE-0011282livFlivF::Tn5KAN-I-SceI at position 355 in Plus orientation ,- pKD465Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3587724 to 3598437
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0011264ugpQCDScomplement35873703588113Downstream
ABE-0011266ugpCCDScomplement35881103589180Downstream
ABE-0011270ugpECDScomplement35891823590027Downstream
ABE-0011272ugpACDScomplement35900243590911Downstream
ABE-0285607repeat_regionforward35909333590998Downstream
ABE-0011274ugpBCDScomplement35910093592325Downstream
ABE-0285608repeat_regionforward35925643592662Downstream
ABE-0011282livFCDScomplement35927243593437Matches
ABE-0011284livGCDScomplement35934393594206Upstream
ABE-0011287livMCDScomplement35942033595480Upstream
ABE-0011290livHCDScomplement35954773596403Upstream
ABE-0011292livKCDScomplement35964513597560Upstream
ABE-0011296panZCDSforward35979843598367Upstream
ABE-0285609repeat_regionforward35983973598495Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.