Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011287 (livM) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011287 showshow history
Names
livM JW3421 ECK3440 b3456
Product
membrane component of an ABC superfamily branched chain amino acid/phenylalanine transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3594203 3595480 1278 426
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001312
EnteroFam0011287: Trusted threshold=1153.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR001851 (IPR001851 ABC transporter, permease) Apr 2008
Automated Process Approved IPR021807 (IPR021807 High-affinity branched-chain amino acid transport system permease, LivHM, N-terminal) Jul 2018
Automated Process Approved PF11862 (PF11862 Domain of unknown function (DUF3382)) Jul 2018
Automated Process Approved PF02653 (PF02653 Branched-chain amino acid transport system / permease component) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009098 leucine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001851
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001851
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001851
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001851
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001851
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name livM Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW3421 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK3440 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3456 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product membrane component of an ABC superfamily branched chain amino acid/phenylalanine transporter Published Annotation - EcoCyc Accession Number: EG10541
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Approved alternate product name high-affinity branched-chain amino acid transport Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name high-affinity branched-chain amino acid transport protein (ABC superfamily, membrane) Published Annotation - Database Name: GenProtEC Jan 2006
Automated Process Approved alternate product name leucine/isoleucine/valine transporter subunit Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved alternate product name leucine/isoleucine/valine transporter subunit; membrane component of ABC superfamily Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Jan 2007
Protein Family
Person Approved EnteroFam EnteroFam0011287: Trusted threshold=1153.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001312
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF02653 Branched-chain amino acid transport system / permease component Protein Sequence Similarity - PFAM Model Name: PF02653
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR021807 High-affinity branched-chain amino acid transport system permease, LivHM, N-terminal Protein Sequence Similarity - InterPro Domain: IPR021807
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF11862 Domain of unknown function (DUF3382) Protein Sequence Similarity - PFAM Model Name: PF11862
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001851 ABC transporter, permease Protein Sequence Similarity - InterPro Domain: IPR001851
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 4.3.A.1.m (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily, membrane component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.108 (transport; substrate; L-leucine/L-valine/L-iso-leucine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.1.18 (metabolism; building block biosynthesis; amino acids; isoleucine/valine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.1.19 (metabolism; building block biosynthesis; amino acids; leucine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P22729 Published Annotation - Swiss-Prot Accession Number: P22729 Jan 2005
Automated Process Approved db xref GeneID:947966 Published Annotation - Entrez Gene Database ID: 947966
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P22729 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1789865 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10541 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0011287 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Transport of small molecules: Amino acids, amines Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note high-affinity branched-chain amino acid transport; membrane component of ABC superfamily; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0009098 - leucine biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76481.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001851
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001851
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009098 leucine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001851
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001851
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001851
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001312 livM CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000657 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001540 livM CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001655 livM CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002027 livM CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001701 livM CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001835 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000572 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004228 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004419 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000316 livM CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000807 livM CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0009249 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017658 livM CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000106 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004204 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0306560 livM CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003716 livM CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003379 livM CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001387 livM CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004868 livM CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003587 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007637 livM CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003505 livM CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000740 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005624 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006479 livM CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007536 LivM CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080422 livM CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003942 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004590 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007234 livM CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005292 livM CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003934 livM CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008368 livM CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008110 livM CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006623 livM CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006169 livM CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005254 livM CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009607 livM CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005339 livM CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007421 livM CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005202 livM CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005270 livM CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005111 livM CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0004998 livM CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005600 livM CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028478 livM CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006475 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008343 livM CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004010 livM CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003217 livM CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003915 livM CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004100 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004093 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003848 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003958 livM CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178101 livM CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003793 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003735 livM CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134375 livM CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002651 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003972 livM CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003871 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000485 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003866 livM CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002133 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008988 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002879 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000382 livM CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003007 livM CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000986 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003826 livM CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0000329 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008029 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000517 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0288466 livM CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006762 livM CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064677 livM CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002576 livM CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0004334 livM CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000725 livM CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0004554 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0146140 livM CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004183 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007931 livM CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004266 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004079 livM CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008181 livM CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011100 livM CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011861 livM CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005317 livM CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008232 livM CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005582 livM CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006221 livM CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007083 livM CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007325 livM CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008186 livM CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006662 livM CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003446 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003412 livM CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004443 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008352 livM CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004640 livM CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007822 livM CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004626 livM CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113935 livM CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085686 livM CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004294 livM CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0101022 livM CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005662 livM CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005087 livM CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005148 livM CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000731 CDS
Person Approved Go view Shigella boydii 227 ADV-0003769 livM CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009285 livM CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003443 livM CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004082 livM CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075594 livM CDS
Person Approved Go view Shigella flexneri 301 ABT-0089707 livM CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003673 livM CDS
Person Approved Go view Shigella sonnei 046 ADD-0004029 livM CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0003285 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0001124 livM CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001875 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000722 livM CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002547 livM CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001667 livM CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001991 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242051 livM CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000275 livM CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007596 livM CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003571 livM CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128092 livM CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008135 livM CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006523 livM CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008518 livM CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007514 livM CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030031 livM CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006968 livM CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000203 livM CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004102 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008103 livM CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004181 livM CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000246 livM CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000289 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004713 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0004226 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001249 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21220mutantTn5 InsertionRequest the StrainABE-0011287livMlivM::Tn5KAN-I-SceI at position 703 in Plus orientation ,- pKD465Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3589203 to 3600480
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0011270ugpECDScomplement35891823590027Downstream
ABE-0011272ugpACDScomplement35900243590911Downstream
ABE-0285607repeat_regionforward35909333590998Downstream
ABE-0011274ugpBCDScomplement35910093592325Downstream
ABE-0285608repeat_regionforward35925643592662Downstream
ABE-0011282livFCDScomplement35927243593437Downstream
ABE-0011284livGCDScomplement35934393594206Overlaps Downstream
ABE-0011287livMCDScomplement35942033595480Matches
ABE-0011290livHCDScomplement35954773596403Overlaps Upstream
ABE-0011292livKCDScomplement35964513597560Upstream
ABE-0011296panZCDSforward35979843598367Upstream
ABE-0285609repeat_regionforward35983973598495Upstream
ABE-0011299livJCDScomplement35985553599658Upstream
ABE-0011303rpoHCDScomplement35999293600783Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.