Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011290 (livH) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011290 showshow history
Names
livH ECK3441 JW3422 hrbD hrbC hrbB b3457
Product
membrane component of an ABC superfamily branched chain amino acid/phenylalanine transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3595477 3596403 927 309
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001313
EnteroFam0011290: Trusted threshold=875.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR001851 (IPR001851 ABC transporter, permease) Apr 2008
Automated Process Approved PF02653 (PF02653 Branched-chain amino acid transport system / permease component) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009098 leucine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001851
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001851
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001851
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001851
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001851
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name livH Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym hrbB Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym hrbD Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ECK3441 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW3422 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym hrbC Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved locus tag b3457 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product membrane component of an ABC superfamily branched chain amino acid/phenylalanine transporter Published Annotation - EcoCyc Accession Number: EG10538
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Uncurated alternate product name high-affinity branched-chain amino acid transport protein (ABC superfamily, membrane) Published Annotation - Database Name: GenProtEC Jan 2006
Automated Process Approved alternate product name leucine/isoleucine/valine transporter subunit Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved alternate product name leucine/isoleucine/valine transporter subunit; membrane component of ABC superfamily Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Jan 2007
Person Approved alternate product name high-affinity branched-chain amino acid transport system; membrane component Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0011290: Trusted threshold=875.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001313
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF02653 Branched-chain amino acid transport system / permease component Protein Sequence Similarity - PFAM Model Name: PF02653
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001851 ABC transporter, permease Protein Sequence Similarity - InterPro Domain: IPR001851
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 4.3.A.1.m (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily, membrane component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.1.19 (metabolism; building block biosynthesis; amino acids; leucine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.108 (transport; substrate; L-leucine/L-valine/L-iso-leucine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.1.18 (metabolism; building block biosynthesis; amino acids; isoleucine/valine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10538 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947965 Published Annotation - Entrez Gene Database ID: 947965
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref ASAP:ABE-0011290 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AEX7 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1789866 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AEX7 Published Annotation - Swiss-Prot Accession Number: P0AEX7 Jan 2006
Person Approved function transport; Transport of small molecules: Amino acids, amines Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note high-affinity branched-chain amino acid transport system; membrane component; membrane component of ABC superfamily; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0009098 - leucine biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76482.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001851
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001851
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009098 leucine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001851
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001851
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001851
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001313 livH CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000656 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001524 livH CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001601 livH CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002028 livH CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001730 livH CDS
Ortholog
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000571 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004229 livH CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004418 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000315 livH_1 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000806 livH_1 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0009251 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017657 livH CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004203 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0306564 livH CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003717 livH CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003380 livH CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001388 livH CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004867 livH CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003588 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007636 livH CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003506 livH CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000739 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005623 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006480 livH CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007535 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080423 livH CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003943 livH CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004591 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007235 livH CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005291 livH CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003935 livH CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008369 livH CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004724 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008111 livH CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006624 livH CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006170 livH CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005253 livH CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009608 livH CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005338 livH CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007422 livH CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005203 livH CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005271 livH CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005112 livH CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0004999 livH CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005601 livH CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028479 livH CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006473 livH CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008344 livH CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004009 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003218 livH CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003914 livH CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004101 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004094 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003847 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003959 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003794 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003736 livH CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134376 livH CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002652 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003973 livH CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003870 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000486 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003867 livH CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002134 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008990 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002880 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000383 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003008 livH CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000985 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003827 livH CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0000328 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008028 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000518 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0288465 livH CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006763 livH CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064678 livH CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002578 livH CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0002278 livH CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000726 livH CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0004553 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0146143 livH CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004182 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007932 livH CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004265 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004080 livH CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008182 livH CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011104 livH CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011858 livH CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005316 livH CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008233 livH CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005583 livH CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006220 livH CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007084 livH CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007326 livH CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008187 livH CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006661 livH CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003447 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003413 livH CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004444 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008353 livH CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004639 livH CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007823 livH CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004627 livH CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113934 livH CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085685 livH CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004295 livH CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0101025 livH CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005661 livH CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005086 livH CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005149 livH CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000732 CDS
Person Approved Go view Shigella boydii 227 ADV-0003770 livH CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009284 livH CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003442 livH CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004083 livH CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075593 livH CDS
Person Approved Go view Shigella flexneri 301 ABT-0089708 livH CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003674 livH CDS
Person Approved Go view Shigella sonnei 046 ADD-0004030 livH CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0003286 livH CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0001123 livH CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001874 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000719 livH CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002546 livH_2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001668 livH CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001992 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242042 livH CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007790 livH CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000274 livH CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007597 livH CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003570 livH CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128103 livH CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008134 livH CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006522 livH CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002757 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008517 livH CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007513 livH CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030030 livH CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006967 livH CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000202 livH CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004104 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008104 livH CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004180 livH CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000245 livH CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000288 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004715 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0004231 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001248 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3590477 to 3601403
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0011272ugpACDScomplement35900243590911Downstream
ABE-0285607repeat_regionforward35909333590998Downstream
ABE-0011274ugpBCDScomplement35910093592325Downstream
ABE-0285608repeat_regionforward35925643592662Downstream
ABE-0011282livFCDScomplement35927243593437Downstream
ABE-0011284livGCDScomplement35934393594206Downstream
ABE-0011287livMCDScomplement35942033595480Overlaps Downstream
ABE-0011290livHCDScomplement35954773596403Matches
ABE-0011292livKCDScomplement35964513597560Upstream
ABE-0011296panZCDSforward35979843598367Upstream
ABE-0285609repeat_regionforward35983973598495Upstream
ABE-0011299livJCDScomplement35985553599658Upstream
ABE-0011303rpoHCDScomplement35999293600783Upstream
ABE-0011311ftsXCDScomplement36010283602086Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.