Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011292 (livK) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011292 showshow history
Names
livK ECK3442 JW3423 hrbD hrbC hrbB b3458
Product
periplasmic-binding component of an ABC superfamily leucine transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3596451 3597560 1110 370
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000709 (IPR000709 Leu/Ile/Val-binding protein) Apr 2008
Automated Process Approved IPR001828 (IPR001828 Receptor, ligand binding region) Apr 2008
Automated Process Approved IPR028081 (IPR028081 Leucine-binding protein domain) Jul 2018
Automated Process Approved IPR028082 (IPR028082 Periplasmic binding protein-like I) Jul 2018
Automated Process Approved PF13458 (PF13458 Periplasmic binding protein) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009098 leucine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006865 amino acid transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000709
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000709
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0005279 (DEPRECATED) amino acid-polyamine transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000709
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name livK Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym hrbB Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym hrbC Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ECK3442 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW3423 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym hrbD Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved locus tag b3458 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product periplasmic-binding component of an ABC superfamily leucine transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2008
Person Approved alternate product name high-affinity leucine-specific transport system; periplasmic binding protein Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name high-affinity branched-chain amino acid transport protein (ABC superfamily, peri_bind) Published Annotation - Database Name: GenProtEC Jan 2006
Automated Process Approved alternate product name leucine transporter subunit Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Automated Process Approved protein family IPR028081 Leucine-binding protein domain Protein Sequence Similarity - InterPro Domain: IPR028081
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001828 Receptor, ligand binding region Protein Sequence Similarity - InterPro Domain: IPR001828
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000709 Leu/Ile/Val-binding protein Protein Sequence Similarity - InterPro Domain: IPR000709
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR028082 Periplasmic binding protein-like I Protein Sequence Similarity - InterPro Domain: IPR028082
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF13458 Periplasmic binding protein Protein Sequence Similarity - PFAM Model Name: PF13458
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated MultiFun 1.5.1.19 (metabolism; building block biosynthesis; amino acids; leucine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.A.1.p (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily, periplasmic binding component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.108 (transport; substrate; L-leucine/L-valine/L-iso-leucine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.2 (location of gene products; periplasmic space) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947964 Published Annotation - Entrez Gene Database ID: 947964
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P04816 Published Annotation - Swiss-Prot Accession Number: P04816 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P04816 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0011292 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1789867 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10540 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Transport of small molecules: Amino acids, amines Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note high-affinity leucine-specific transport system; periplasmic binding protein; periplasmic-binding component of ABC superfamily; GO_component: GO:0042597 - periplasmic space; GO_process: GO:0009098 - leucine biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76483.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Periplasmic Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0009098 leucine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006865 amino acid transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000709
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000709
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0005279 (DEPRECATED) amino acid-polyamine transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000709
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000139 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002136 livK CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000039 livK CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001238 livK CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000032 livK CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001838 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004230 livK CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004417 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000314 livK CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000805 livK CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0017656 livK CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004202 CDS
Person Uncurated Go view Enterobacter sp. 638 AEL-0004676 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001389 livK CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004866 livK CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003589 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007635 livK CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003507 livK CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000738 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005621 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006481 livK CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0010464 LivK CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080424 livK CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003944 livK CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004592 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007236 livK CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005290 livK CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003936 livK CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008370 livK CDS
Automated Process Approved Go view Escherichia coli EC4024 (EHEC) BBI-0004725 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008112 livK CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006625 livK CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006171 livK CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005252 livK CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009609 livK CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005337 livK CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007423 livK CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005204 livK CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005272 livK CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005113 livK CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005000 livK CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005602 livK CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028480 livK CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005501 livK CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008345 livK CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004008 CDS
Person Approved Go view Escherichia coli K-12 DH10B AEC-0003219 livK CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003913 livK CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004102 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004095 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003846 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003960 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003795 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003737 livK CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134377 livK CDS
Automated Process Approved Go view Escherichia coli TW14588 (EHEC) BBK-0002653 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003974 livK CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000487 CDS
Person Approved Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003868 livK CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002135 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003009 livK CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000984 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003828 livK CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000327 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008027 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288464 livK CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064679 livK CDS
Person Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002579 livK CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0002279 livK CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000727 livK CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0004551 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0146147 livK CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007933 livK CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004264 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004081 pseudogene
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008183 livK CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011107 livK CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011855 livK CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005315 livK CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008234 livK CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005584 livK CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006219 livK CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007085 livK CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007327 livK CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008188 livK CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006660 livK CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003448 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003414 livK CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004445 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008354 livK CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004638 livK CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007824 livK CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004628 livK CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113930 livK CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085684 livK CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004296 livK CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0101029 livK CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005660 livK CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005085 livK CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005150 livK CDS
Person Uncurated Go view Serratia proteamaculans 568 AEN-0006269 CDS
Person Approved Go view Shigella boydii 227 ADV-0003771 livK CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009283 livK CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003441 livK CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004084 livK CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075592 livK CDS
Person Approved Go view Shigella flexneri 301 ABT-0089709 livK CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003675 livK CDS
Person Approved Go view Shigella sonnei 046 ADD-0004031 livK CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0001121 livK CDS
Automated Process Approved Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001873 CDS
Automated Process Approved Go view Yersinia enterocolitica 8081 BAH-0000716 livJ CDS
Automated Process Approved Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002545 livK CDS
Automated Process Approved Go view Yersinia intermedia ATCC 29909 [T] AEH-0001669 livK CDS
Automated Process Approved Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001993 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242041 livK2 CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007791 livK CDS
Automated Process Approved Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000270 livK CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007598 livK CDS
Automated Process Approved Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003569 livK CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128112 livK CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008133 livK CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006521 livK CDS
Automated Process Approved Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002759 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008516 livK CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007512 livK CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030029 livK CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006966 livK CDS
Automated Process Approved Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000200 livK CDS
Automated Process Approved Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004105 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008107 livK CDS
Automated Process Approved Go view Yersinia pseudotuberculosis IP31758 ADS-0004179 livK CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000244 livK CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000286 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004716 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001247 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3591451 to 3602560
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0011274ugpBCDScomplement35910093592325Downstream
ABE-0285608repeat_regionforward35925643592662Downstream
ABE-0011282livFCDScomplement35927243593437Downstream
ABE-0011284livGCDScomplement35934393594206Downstream
ABE-0011287livMCDScomplement35942033595480Downstream
ABE-0011290livHCDScomplement35954773596403Downstream
ABE-0011292livKCDScomplement35964513597560Matches
ABE-0011296panZCDSforward35979843598367Upstream
ABE-0285609repeat_regionforward35983973598495Upstream
ABE-0011299livJCDScomplement35985553599658Upstream
ABE-0011303rpoHCDScomplement35999293600783Upstream
ABE-0011311ftsXCDScomplement36010283602086Upstream
ABE-0011313ftsECDScomplement36020793602747Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.