Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011332 (zntA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011332 showshow history
Names
zntA yhhO ATZN JW3434 ECK3453 b3469
Product
Zn2+/Cd2+/Pb2+ exporting P-type ATPase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3606451 3608649 2199 733
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001322
EnteroFam0011332: Trusted threshold=1709.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR006121 (IPR006121 Heavy metal-associated domain, HMA) Apr 2008
Automated Process Approved IPR000150 (IPR000150 Cof family) Apr 2008
Automated Process Approved IPR001757 (IPR001757 P-type ATPase) Apr 2008
Automated Process Approved IPR005834 (IPR005834 (DEPRECATED) Haloacid dehalogenase-like hydrolase) Apr 2008
Automated Process Approved IPR001969 (IPR001969 Aspartic peptidase, active site) Apr 2008
Automated Process Approved IPR006404 (IPR006404 (DEPRECATED) ATPase, P-type, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating) Apr 2008
Automated Process Approved IPR008250 (IPR008250 P-type ATPase, A domain superfamily) Apr 2008
Automated Process Approved IPR006416 (IPR006416 (DEPRECATED) ATPase, P-type, heavy metal translocating) Apr 2008
Automated Process Approved IPR000695 (IPR000695 (DEPRECATED) ATPase, P-type, H+ transporting proton pump) Apr 2008
Automated Process Approved IPR027256 (IPR027256 P-type ATPase, subfamily IB) Jul 2018
Automated Process Approved IPR036163 (IPR036163 Heavy metal-associated domain superfamily) Jul 2018
Automated Process Approved IPR023298 (IPR023298 P-type ATPase, transmembrane domain superfamily) Jul 2018
Automated Process Approved IPR036412 (IPR036412 HAD-like superfamily) Jul 2018
Automated Process Approved PF00122 (PF00122 E1-E2 ATPase) Jul 2018
Automated Process Approved PF00702 (PF00702 haloacid dehalogenase-like hydrolase) Jul 2018
Automated Process Approved PF00403 (PF00403 Heavy-metal-associated domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0015992 (DEPRECATED) proton transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000695
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0006812 cation transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR027256
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved GO biological process GO:0015986 ATP synthesis coupled proton transport Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006508 proteolysis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001969
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001757
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0030001 metal ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006121
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000150
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001757
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006416
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006404
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0046873 metal ion transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006404
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016820 (DEPRECATED) hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008250
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0019829 ATPase-coupled cation transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR027256
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004190 aspartic-type endopeptidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001969
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0015662 P-type ion transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001757
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO molecular function GO:0015662 P-type ion transporter activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0046872 metal ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006121
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000150
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001757
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005834
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name zntA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK3453 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym ATZN Published Annotation - GenBank Accession Number: BX936398
Reference: Yersinia pseudotuberculosis IP32953 		Sep 2007
Person Approved synonym JW3434 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym yhhO Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved locus tag b3469 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product Zn2+/Cd2+/Pb2+ exporting P-type ATPase Published Annotation - EcoCyc Accession Number: EG12215
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Uncurated alternate product name Pb/Cd/Zn/Hg transporting ATPase (P-type ATPase family) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name zinc-transporting ATPase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Approved alternate product name zinc, cobalt and lead efflux system Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0011332: Trusted threshold=1709.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001322
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR006404 (DEPRECATED) ATPase, P-type, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating Protein Sequence Similarity - InterPro Domain: IPR006404
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036163 Heavy metal-associated domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036163
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR027256 P-type ATPase, subfamily IB Protein Sequence Similarity - InterPro Domain: IPR027256
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036412 HAD-like superfamily Protein Sequence Similarity - InterPro Domain: IPR036412
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00122 E1-E2 ATPase Protein Sequence Similarity - PFAM Model Name: PF00122
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00403 Heavy-metal-associated domain Protein Sequence Similarity - PFAM Model Name: PF00403
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00702 haloacid dehalogenase-like hydrolase Protein Sequence Similarity - PFAM Model Name: PF00702
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000695 (DEPRECATED) ATPase, P-type, H+ transporting proton pump Protein Sequence Similarity - InterPro Domain: IPR000695
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR023298 P-type ATPase, transmembrane domain superfamily Protein Sequence Similarity - InterPro Domain: IPR023298
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001757 P-type ATPase Protein Sequence Similarity - InterPro Domain: IPR001757
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR005834 (DEPRECATED) Haloacid dehalogenase-like hydrolase Protein Sequence Similarity - InterPro Domain: IPR005834
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006416 (DEPRECATED) ATPase, P-type, heavy metal translocating Protein Sequence Similarity - InterPro Domain: IPR006416
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000150 Cof family Protein Sequence Similarity - InterPro Domain: IPR000150
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001969 Aspartic peptidase, active site Protein Sequence Similarity - InterPro Domain: IPR001969
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006121 Heavy metal-associated domain, HMA Protein Sequence Similarity - InterPro Domain: IPR006121
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR008250 P-type ATPase, A domain superfamily Protein Sequence Similarity - InterPro Domain: IPR008250
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 3.6.3.3 Published Annotation - Swiss-Prot Accession Number: P37617 Feb 2006
Person Approved EC number 3.6.3.5 Published Annotation - Swiss-Prot Accession Number: P37617 Feb 2006
Person Uncurated MultiFun 4.3.A.3 (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The P-type ATPase (P-ATPase) Superfamily) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.8 (metabolism; energy metabolism, carbon; ATP proton motive force interconversion) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 5.6.2 (cell processes; protection; detoxification (xenobiotic metabolism)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.151 (transport; substrate; Pb/Cd/Zn/Hg) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12215 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947972 Published Annotation - Entrez Gene Database ID: 947972
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P37617 Published Annotation - Swiss-Prot Accession Number: P37617 Jan 2005
Automated Process Approved db xref ASAP:ABE-0011332 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P37617 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1789879 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Transport of small molecules: Cations Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note zinc-transporting ATPase; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_function: GO:0015662 - ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism; GO_process: GO:0015986 - ATP synthesis coupled proton transport; GO_process: GO:0006805 - xenobiotic metabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76494.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0015992 (DEPRECATED) proton transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000695
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0006812 cation transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR027256
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved GO biological process GO:0015986 ATP synthesis coupled proton transport Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006508 proteolysis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001969
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000150
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0030001 metal ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006121
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001757
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001757
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006416
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004190 aspartic-type endopeptidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001969
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006404
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0046873 metal ion transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006404
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016820 (DEPRECATED) hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008250
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0019829 ATPase-coupled cation transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR027256
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005834
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0015662 P-type ion transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001757
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0046872 metal ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006121
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000150
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001757
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO molecular function GO:0015662 P-type ion transporter activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001322 zntA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000648 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000859 zntA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000651 zntA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001405 zntA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000225 zntA CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004243 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004399 zntA CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000302 zntA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000791 zntA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008658 CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000531 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004188 zntA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0306597 zntA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003729 zntA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003391 zntA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001411 cadA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004854 cadA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003600 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007623 cadA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003523 zntA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000720 zntA CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005608 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006493 cadA CDS
Person Uncurated Go view Escherichia coli B7A (ETEC) ADK-0010112 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080438 zntA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003958 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004604 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007250 cadA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005278 cadA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003947 zntA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008384 cadA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004740 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008126 cadA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006639 cadA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006185 cadA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005238 cadA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009623 cadA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005323 cadA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007437 cadA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005218 cadA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005286 cadA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005127 cadA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005014 cadA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005616 cadA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028494 zntA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005489 zntA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008357 cadA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003990 zntA CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003230 zntA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003902 zntA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004115 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004109 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003835 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003974 zntA CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178121 zntA CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003808 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003749 zntA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134390 zntA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002668 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003993 zntA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003859 zntA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000968 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003883 zntA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002150 zntA CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008458 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002891 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000395 zntA CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003019 zntA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000974 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003838 zntA CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000317 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008017 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000529 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288453 zntA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006775 zntA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064690 zntA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002566 zntA CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0004339 zntA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000737 zntA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0004539 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0146171 zntA CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0005357 cadA-1 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007945 cadA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004253 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004096 zntA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008196 cadA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011143 zntA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011809 zntA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005301 cadA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008246 cadA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005595 cadA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006207 cadA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007098 cadA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007340 cadA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008200 cadA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006648 cadA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003459 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003426 zntA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004460 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008367 cadA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004626 cadA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007837 cadA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004641 cadA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113901 zntA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085672 zntA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004310 zntA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0101075 zntA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005647 cadA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005072 cadA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005162 cadA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000747 zntA CDS
Person Approved Go view Shigella boydii 227 ADV-0003785 zntA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009272 cadA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003429 cadA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004098 zntA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075580 zntA CDS
Person Approved Go view Shigella flexneri 301 ABT-0089720 zntA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003686 zntA CDS
Person Approved Go view Shigella sonnei 046 ADD-0004042 zntA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001101 VC1033 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0001098 zntA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001862 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000677 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002534 zntA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001680 zntA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002003 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242008 zntA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004676 cadA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000257 zntA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007612 cadA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003557 zntA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128150 zntA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008120 cadA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006508 cadA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001070 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008504 cadA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007498 cadA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030016 zntA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006954 cadA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000187 zntA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004119 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008119 cadA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004168 cadA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000233 zntA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000274 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004729 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0004295 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001232 zntA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21224mutantTn5 InsertionRequest the StrainABE-0011332zntAzntA::Tn5KAN-I-SceI at position 1911 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3601451 to 3613649
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0011311ftsXCDScomplement36010283602086Upstream
ABE-0011313ftsECDScomplement36020793602747Upstream
ABE-0011318ftsYCDScomplement36027503604243Upstream
ABE-0011321rsmDCDSforward36043933604989Upstream
ABE-0011323yhhLCDSforward36049793605248Upstream
ABE-0011325yhhMCDScomplement36052513605610Upstream
ABE-0011329yhhNCDSforward36057513606377Upstream
ABE-0011332zntACDSforward36064513608649Matches
ABE-0011336tusACDScomplement36087513608996Downstream
ABE-0011340yhhQCDSforward36092173609882Downstream
ABE-0011342dcrBCDSforward36099553610512Downstream
ABE-0011344yhhSCDScomplement36105163611733Downstream
ABE-0011347yhhTCDSforward36118653612914Downstream
ABE-0011351acpTCDSforward36129693613556Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.