Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011351 (acpT) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011351 showshow history
Names
acpT JW3440 ECK3459 yhhU b3475
Product
holo-(acyl carrier protein) synthase 2
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3612969 3613556 588 196
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR008278 (IPR008278 4'-phosphopantetheinyl transferase domain) Apr 2008
Automated Process Approved IPR037143 (IPR037143 4'-phosphopantetheinyl transferase domain superfamily) Jul 2018
Automated Process Approved PF01648 (PF01648 4'-phosphopantetheinyl transferase superfamily) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009059 macromolecule biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008278
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008897 holo-[acyl-carrier-protein] synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008278
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000287 magnesium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008278
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name acpT Published Annotation - Swiss-Prot Accession Number: P37623 Aug 2002
Person Approved synonym yhhU Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK3459 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW3440 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3475 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product holo-(acyl carrier protein) synthase 2 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name holo-(acyl carrier protein) synthase 2 (phophopantetheinyltransferase) Published Annotation - Database Name: GenProtEC Jan 2006
Person Uncurated alternate product name protein involved in phosphopantetheinyl transfer and holoACP synthesis Published Annotation - Swiss-Prot Accession Number: P37623 Jan 2006
Protein Family
Automated Process Approved protein family IPR008278 4'-phosphopantetheinyl transferase domain Protein Sequence Similarity - InterPro Domain: IPR008278
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR037143 4'-phosphopantetheinyl transferase domain superfamily Protein Sequence Similarity - InterPro Domain: IPR037143
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF01648 4'-phosphopantetheinyl transferase superfamily Protein Sequence Similarity - PFAM Model Name: PF01648
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 2.7.8.- Published Annotation - Swiss-Prot Accession Number: P37623 Feb 2006
Person Uncurated MultiFun 1.5.4 (metabolism; building block biosynthesis; fatty acid and phosphatidic acid) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0011351 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1789886 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947979 Published Annotation - Entrez Gene Database ID: 947979
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P37623 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P37623 Published Annotation - Swiss-Prot Accession Number: P37623 Jan 2005
Automated Process Approved db xref EcoGene:EG12221 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76500.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0009059 macromolecule biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008278
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000287 magnesium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008278
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008897 holo-[acyl-carrier-protein] synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008278
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0006862 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002891 acpT CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003063 acpT CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0008134 acpT CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002872 acpT CDS
Ortholog
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000278 psf-1 CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0000785 psf-1 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001419 acpT CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004848 acpT CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003608 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007617 acpT CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003529 acpT CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000714 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005602 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006498 acpT CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0010547 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080444 acpT CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003964 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004610 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005272 acpT CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003955 acpT CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008390 acpT CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004767 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008152 acpT CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006665 acpT CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006211 acpT CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005212 acpT CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009649 acpT CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005297 acpT CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007463 acpT CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005244 acpT CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005312 acpT CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005151 acpT CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005041 acpT CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005640 acpT CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028519 acpT CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005483 sfp_2 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008363 acpT CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003984 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003236 acpT CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003896 acpT CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004121 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004115 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003829 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003980 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178127 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003814 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003756 acpT CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134414 acpT CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002692 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004000 acpT CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002176 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003804 acpT CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004338 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000593 acpT CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003707 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007952 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004246 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004106 acpT CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008203 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011176 acpT CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011785 acpT CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005294 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008253 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005602 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006200 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007105 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007347 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008207 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006641 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003467 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003433 yhhU CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004468 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008374 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004619 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007844 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004648 CDS
Person Uncurated Go view Salmonella Typhi CT18 ABX-0113885 CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0085665 CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004317 acpT CDS
Person Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0101094 acpT CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005640 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005065 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005169 CDS
Person Approved Go view Shigella boydii 227 ADV-0003791 yhhU CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009266 acpT CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003423 acpT CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004110 yhhU CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075572 yhhU CDS
Person Approved Go view Shigella flexneri 301 ABT-0089726 yhhU CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003692 yhhU CDS
Person Approved Go view Shigella sonnei 046 ADD-0004048 acpT CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB23756mutantTn5 InsertionRequest the StrainABE-0011351acpTyhhU::Tn5KAN-I-SceI at position 432 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3607969 to 3618556
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0011332zntACDSforward36064513608649Upstream
ABE-0011336tusACDScomplement36087513608996Upstream
ABE-0011340yhhQCDSforward36092173609882Upstream
ABE-0011342dcrBCDSforward36099553610512Upstream
ABE-0011344yhhSCDScomplement36105163611733Upstream
ABE-0011347yhhTCDSforward36118653612914Upstream
ABE-0011351acpTCDSforward36129693613556Matches
ABE-0011354nikACDSforward36136673615241Downstream
ABE-0011356nikBCDSforward36152413616185Downstream
ABE-0011358nikCCDSforward36161823617015Downstream
ABE-0011360nikDCDSforward36170153617779Downstream
ABE-0011362nikECDSforward36177763618582Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.