Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011407 (pitA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011407 showshow history
Names
pitA pit JW3460 ECK3478 b3493
Product
metal phosphate:H+ symporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3637642 3639141 1500 500
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001204 (IPR001204 Phosphate transporter) Apr 2008
Automated Process Approved PF01384 (PF01384 Phosphate transporter family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006793 phosphorus metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006817 phosphate ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001204
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001204
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0005315 inorganic phosphate transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001204
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name pitA Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK3478 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym pit Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW3460 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3493 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product metal phosphate:H+ symporter Published Annotation - EcoCyc Accession Number: EG12230
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Uncurated alternate product name low-affinity phosphate transport protein (PiT family) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name low-affinity phosphate transport Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Approved alternate product name phosphate transporter, low-affinity Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved alternate product name phosphate transporter, low-affinity; tellurite importer Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Automated Process Approved protein family PF01384 Phosphate transporter family Protein Sequence Similarity - PFAM Model Name: PF01384
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001204 Phosphate transporter Protein Sequence Similarity - InterPro Domain: IPR001204
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 1.8.1 (metabolism; metabolism of other compounds; phosphorous metabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.2.A.20 (transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The Inorganic Phosphate Transporter (PiT) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.155 (transport; substrate; phosphate) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948009 Published Annotation - Entrez Gene Database ID: 948009
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0AFJ7 Published Annotation - Swiss-Prot Accession Number: P0AFJ7 Jan 2006
Automated Process Approved db xref GI:1789907 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AFJ7 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0011407 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12230 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Transport of small molecules: Anions Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note low-affinity phosphate transport; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0006793 - phosphorus metabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76518.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006817 phosphate ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001204
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006793 phosphorus metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001204
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005315 inorganic phosphate transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001204
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Homolog
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264607 pit CDS
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000119 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000047 pitB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000052 pitB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000162 pitB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000049 pitB CDS
Ortholog
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129857 pitA CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0105257 pitA CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104704 pitA CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000267 pitA_1 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000775 pitA CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0016375 pitA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003621 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003548 pitA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000695 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005577 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080467 pitA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003982 pitA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004630 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003969 pitA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008408 pitA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009673 pitA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028543 pitA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005471 pitA_2 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008380 pitA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003965 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003253 pitA CDS
Automated Process Approved Go view Escherichia coli K-12 W3110 ADY-0003877 pitA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004138 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004132 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003983 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004001 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178146 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003829 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003779 pitA CDS
Automated Process Approved Go view Escherichia coli Sakai (EHEC) ACA-0134437 pitA CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004021 pitA CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000560 CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060250 pitA CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004386 CDS
Automated Process Approved Go view Salmonella Typhi CT18 ABX-0113861 pitA CDS
Automated Process Approved Go view Salmonella Typhimurium LT2 [T] ABU-0101112 pitA CDS
Automated Process Approved Go view Shigella boydii 227 ADV-0003812 pitA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009248 pitA CDS
Automated Process Approved Go view Shigella dysenteriae 197 ADU-0004042 pitA CDS
Automated Process Approved Go view Shigella flexneri 2457T ABQ-0075541 pitA CDS
Automated Process Approved Go view Shigella flexneri 301 ABT-0089755 pitA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003722 pitA CDS
Automated Process Approved Go view Shigella sonnei 046 ADD-0004063 pitA CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000291 pitA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3632642 to 3644141
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0011391yhiL_2CDSpcomplement36328523633244Upstream
ABE-0285133yhiLpseudogenecomplement36328523634458Upstream
ABE-0011393yhiL_1CDSpcomplement36332203634458Upstream
ABE-0011400yhiMCDSforward36348413635893Upstream
ABE-0011402yhiNCDScomplement36362083637410Upstream
ABE-0011407pitACDSforward36376423639141Matches
ABE-0285611repeat_regionforward36392093639306Downstream
ABE-0011410uspBCDScomplement36393853639720Downstream
ABE-0011414uspACDSforward36401113640545Downstream
ABE-0285814yriACDScomplement36406123640686Downstream
ABE-0285821yriBCDScomplement36406433640696Downstream
ABE-0011417dtpBCDSforward36408623642331Downstream
ABE-0011419rsmJCDScomplement36423803643132Downstream
ABE-0011421prlCCDScomplement36431403645182Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.