Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011417 (dtpB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011417 showshow history
Names
dtpB JW3463 ECK3481 yhiP b3496
Product
proton-dependent peptide transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3640862 3642331 1470 490
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR005279 (IPR005279 Dipeptide/tripeptide permease) Apr 2008
Automated Process Approved IPR000109 (IPR000109 Proton-dependent oligopeptide transporter family) Apr 2008
Automated Process Approved IPR023778 (IPR023778 Amino acid/peptide transporter family, dipeptide/tripeptide permease B) Jul 2018
Automated Process Approved IPR036259 (IPR036259 MFS transporter superfamily) Jul 2018
Automated Process Approved PF00854 (PF00854 POT family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0015833 peptide transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005279
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000109
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006857 oligopeptide transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000109
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000109
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:1904680 peptide transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005279
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000109
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000109
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Uncurated name dtpB Published Annotation - PubMed ID: 18485005
Reference: Escherichia coli 		Apr 2009
Person Approved synonym JW3463 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK3481 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym yhiP Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved locus tag b3496 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product proton-dependent peptide transporter Experimental - PubMed ID: 18485005
Reference: Escherichia coli 		Apr 2009
Person Approved alternate product name putative transport protein Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name putative peptide transport protein (POT family) Published Annotation - Database Name: GenProtEC Jan 2006
Automated Process Approved alternate product name dipeptide and tripeptide permease B Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Automated Process Approved protein family IPR036259 MFS transporter superfamily Protein Sequence Similarity - InterPro Domain: IPR036259
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000109 Proton-dependent oligopeptide transporter family Protein Sequence Similarity - InterPro Domain: IPR000109
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR023778 Amino acid/peptide transporter family, dipeptide/tripeptide permease B Protein Sequence Similarity - InterPro Domain: IPR023778
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00854 POT family Protein Sequence Similarity - PFAM Model Name: PF00854
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR005279 Dipeptide/tripeptide permease Protein Sequence Similarity - InterPro Domain: IPR005279
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.2.A.17 (transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The Proton-dependent Oligopeptide Transporter (POT) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.152 (transport; substrate; peptide) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12232 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0011417 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948006 Published Annotation - Entrez Gene Database ID: 948006
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P36837 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1789911 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P36837 Published Annotation - Swiss-Prot Accession Number: P36837 Jan 2005
Person Approved function putative transport; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note putative transport protein; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76521.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006857 oligopeptide transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000109
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0015833 peptide transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005279
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000109
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000109
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:1904680 peptide transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005279
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000109
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000109
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Homolog
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264842 CDS
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0006865 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002826 dtpB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002994 dtpB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001740 dtpB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002817 dtpB CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002062 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000264 dtpB CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0000771 dtpB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001306 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004825 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003624 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007590 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003551 yhiP CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000692 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005574 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006526 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005369 YhiP CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080471 dtpB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003985 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004636 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006811 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005243 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003972 yhiP CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008411 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004797 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008178 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006692 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006237 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005186 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009677 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005270 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007491 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005273 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005339 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005180 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005069 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005667 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028546 yhiP CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005468 dtpB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008384 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003962 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003256 yhiP CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003874 yhiP CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004143 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004136 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003987 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004005 tppB CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178149 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003832 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003782 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134440 yhiP CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002720 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004024 yhiP CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000547 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003909 yhiP CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007962 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004239 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004116 yhiP CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008213 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011210 yhiP CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011748 yhiP CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005284 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008263 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005612 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006190 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006815 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007357 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008217 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006631 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003482 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003448 yhiP CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004479 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008384 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004609 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007854 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004658 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113855 CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0085650 CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004327 yhiP CDS
Person Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0101125 yhiP CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005630 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005054 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005179 CDS
Person Approved Go view Shigella boydii 227 ADV-0003815 yhiP CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009245 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003371 CDS
Person Uncurated Go view Shigella dysenteriae 197 ADU-0004039 yhiP CDS
Person Uncurated Go view Shigella flexneri 301 ABT-0089758 yhiP pseudogene
Person Approved Go view Shigella sonnei 046 ADD-0004066 yhiP CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006898 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002647 dtpB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000236 dtpB CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0004361 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001215 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21238mutantTn5 InsertionRequest the StrainABE-0011417dtpByhiP::Tn5KAN-I-SceI at position 532 in Minus orientation ,+ pKD460Blattner Laboratory
FB21239mutantTn5 InsertionRequest the StrainABE-0011417dtpByhiP::Tn5KAN-I-SceI at position 532 in Minus orientation ,- pKD465Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3635862 to 3647331
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0011400yhiMCDSforward36348413635893Upstream
ABE-0011402yhiNCDScomplement36362083637410Upstream
ABE-0011407pitACDSforward36376423639141Upstream
ABE-0285611repeat_regionforward36392093639306Upstream
ABE-0011410uspBCDScomplement36393853639720Upstream
ABE-0011414uspACDSforward36401113640545Upstream
ABE-0285814yriACDScomplement36406123640686Upstream
ABE-0285821yriBCDScomplement36406433640696Upstream
ABE-0011417dtpBCDSforward36408623642331Matches
ABE-0011419rsmJCDScomplement36423803643132Downstream
ABE-0011421prlCCDScomplement36431403645182Downstream
ABE-0011428rlmJCDSforward36453853646227Downstream
ABE-0011432gorCDSforward36462993647651Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.