Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011432 (gor) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011432 showshow history
Names
gor gorA JW3467 ECK3485 b3500
Product
glutathione oxidoreductase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3646299 3647651 1353 451
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001332
EnteroFam0011432: Trusted threshold=1321.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR012999 (IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site) Apr 2008
Automated Process Approved IPR013027 (IPR013027 (DEPRECATED) FAD-dependent pyridine nucleotide-disulphide oxidoreductase) Apr 2008
Automated Process Approved IPR001100 (IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I) Apr 2008
Automated Process Approved IPR004099 (IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain) Apr 2008
Automated Process Approved IPR000815 (IPR000815 (DEPRECATED) Mercuric reductase) Apr 2008
Automated Process Approved IPR001327 (IPR001327 (DEPRECATED) Pyridine nucleotide-disulphide oxidoreductase, NAD-binding domain) Apr 2008
Automated Process Approved IPR006322 (IPR006322 Glutathione reductase, eukaryote/bacterial) Apr 2008
Automated Process Approved IPR023753 (IPR023753 FAD/NAD(P)-binding domain) Jul 2018
Automated Process Approved IPR016156 (IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily) Jul 2018
Automated Process Approved IPR036188 (IPR036188 FAD/NAD(P)-binding domain superfamily) Jul 2018
Automated Process Approved PF07992 (PF07992 Pyridine nucleotide-disulphide oxidoreductase) Jul 2018
Automated Process Approved PF02852 (PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR023753, IPR004099, IPR006322, IPR016156
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001100
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006749 glutathione metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006322
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0045454 cell redox homeostasis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004099
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004099
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0050661 NADP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006322
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004362 glutathione-disulfide reductase (NADPH) activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006322
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0050660 flavin adenine dinucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000815
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001100
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name gor Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Automated Process Approved synonym gorA Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK3485 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW3467 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3500 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product glutathione oxidoreductase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name glutathione oxidoreductase, nucleotide-binding Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name glutathione oxidoreductase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0011432: Trusted threshold=1321.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001332
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site Protein Sequence Similarity - InterPro Domain: IPR012999
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013027 (DEPRECATED) FAD-dependent pyridine nucleotide-disulphide oxidoreductase Protein Sequence Similarity - InterPro Domain: IPR013027
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I Protein Sequence Similarity - InterPro Domain: IPR001100
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily Protein Sequence Similarity - InterPro Domain: IPR016156
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036188 FAD/NAD(P)-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036188
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF07992 Pyridine nucleotide-disulphide oxidoreductase Protein Sequence Similarity - PFAM Model Name: PF07992
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Protein Sequence Similarity - PFAM Model Name: PF02852
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR023753 FAD/NAD(P)-binding domain Protein Sequence Similarity - InterPro Domain: IPR023753
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006322 Glutathione reductase, eukaryote/bacterial Protein Sequence Similarity - InterPro Domain: IPR006322
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Protein Sequence Similarity - InterPro Domain: IPR004099
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000815 (DEPRECATED) Mercuric reductase Protein Sequence Similarity - InterPro Domain: IPR000815
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001327 (DEPRECATED) Pyridine nucleotide-disulphide oxidoreductase, NAD-binding domain Protein Sequence Similarity - InterPro Domain: IPR001327
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 1.8.1.7 Published Annotation - Swiss-Prot Accession Number: P06715 Feb 2006
Automated Process Uncurated EC number 1.-.-.- Published Annotation - Database Name: EC2GO: GO:0016491
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P06715 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10412 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0011432 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P06715 Published Annotation - Swiss-Prot Accession Number: P06715 Jan 2005
Automated Process Approved db xref GeneID:948014 Published Annotation - Entrez Gene Database ID: 948014
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1789915 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Biosynthesis of cofactors, carriers: Thioredoxin, glutaredoxin, glutathione Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76525.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.97
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006749 glutathione metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006322
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0045454 cell redox homeostasis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004099
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR023753, IPR004099, IPR006322, IPR016156
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001100
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004099
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0050661 NADP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006322
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004362 glutathione-disulfide reductase (NADPH) activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006322
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0050660 flavin adenine dinucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000815
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001100
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001332 gor CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000331 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000727 gor CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000538 gor CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000284 gor CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000240 gor CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001885 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003502 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004263 gor CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004367 gor CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000260 gor CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0000765 gor CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004396 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0016207 gor CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0004238 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000033 gor CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0306709 gor CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003775 gor CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003438 gor CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001311 gor CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004821 gor CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003628 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007586 gor CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003555 gor CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000688 gor CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005570 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006530 gor CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005365 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080475 gor CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003989 gor CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004640 gor CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006815 gor CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005239 gor CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003976 gor CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008415 gor CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004802 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008182 gor CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006696 gor CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006241 gor CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005182 gor CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009681 gor CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005266 gor CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007495 gor CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005277 gor CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005343 gor CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005184 gor CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005073 gor CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005671 gor CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028550 gor CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005464 gor CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008388 gor CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003958 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003260 gor CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003870 gor CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004147 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004140 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003991 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004009 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178154 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003836 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003786 gor CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134444 gor CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002725 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004028 gor CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003516 gor CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000552 gor CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003914 gor CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002189 gor CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004368 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002934 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000436 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003058 gor CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003880 gor CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000274 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011496 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000568 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288395 gor CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006816 gor CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060264 gor CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000036 gor CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001226 gor CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000170 gor CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009502 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0137625 gor CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004328 gor-2 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007970 gor CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004232 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004121 gor CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008219 gor CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011227 gor CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011731 gor CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005278 gor CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008269 gor CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005618 gor CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006184 gor CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006822 gor CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007364 gor CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008224 gor CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006626 gor CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003488 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003454 gor CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004485 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008390 gor CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004602 gor CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007860 gor CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004664 gor CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113841 gor CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085644 gor CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004333 gor CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0101140 gor CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005624 gor CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005046 gor CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005185 gor CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001136 gor CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0268362 gor CDS
Person Approved Go view Shigella boydii 227 ADV-0003819 gor CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009241 gor CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003367 gor CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004035 gor CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075533 gor CDS
Person Approved Go view Shigella flexneri 301 ABT-0089761 gor CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003729 gor CDS
Person Approved Go view Shigella sonnei 046 ADD-0004070 gor CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000202 VC0186 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0007743 gor CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000145 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011699 gor CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001178 gor CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001496 gor CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000722 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242314 gor CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008210 gor CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004534 gor CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007462 gor CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003415 gor CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128697 gor CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005891 gor CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007263 gor CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006086 gor CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007927 gor CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033646 gor CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006783 gor CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004350 gor CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003995 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006769 gor CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0008086 gor CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003936 gor CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004789 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000146 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0004373 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001211 gor CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21243mutantTn5 InsertionRequest the StrainABE-0011432gorgor::Tn5KAN-I-SceI at position 1092 in Minus orientation ,+ pKD460Blattner Laboratory
FB21244mutantTn5 InsertionRequest the StrainABE-0011432gorgor::Tn5KAN-I-SceI at position 1092 in Minus orientation ,- pKD465Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3641299 to 3652651
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0011417dtpBCDSforward36408623642331Upstream
ABE-0011419rsmJCDScomplement36423803643132Upstream
ABE-0011421prlCCDScomplement36431403645182Upstream
ABE-0011428rlmJCDSforward36453853646227Upstream
ABE-0011432gorCDSforward36462993647651Matches
ABE-0285195dinQCDScomplement36477053647788Downstream
ABE-0285789agrAncRNAforward36480633648146Downstream
ABE-0285790agrBncRNAforward36482943648377Downstream
ABE-0011435arsRCDSforward36485283648881Downstream
ABE-0011437arsBCDSforward36489353650224Downstream
ABE-0011439arsCCDSforward36502373650662Downstream
ABE-0285612repeat_regionforward36507123650811Downstream
ABE-0011443yhiSpseudogeneforward36512913652036(Interval #1) Downstream
ABE-0011444is_elementforward36520363653230Downstream
ABE-0285613mobile_elementcomplement36520363653230Downstream
ABE-0011446insH11CDScomplement36521823653162Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.