Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011437 (arsB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011437 showshow history
Names
arsB JW3469 ECK3487 arsF b3502
Product
arsenite/antimonite transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3648935 3650224 1290 430
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000802 (IPR000802 Arsenical pump membrane protein, ArsB) Apr 2008
Automated Process Approved PF02040 (PF02040 Arsenical pump membrane protein) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006805 xenobiotic metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0015700 arsenite transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000802
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000802
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0015105 arsenite transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000802
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name arsB Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym arsF Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym JW3469 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK3487 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3502 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product arsenite/antimonite transporter Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name arsenical pump membrane protein Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name arsenical pump (Ars family) Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family PF02040 Arsenical pump membrane protein Protein Sequence Similarity - PFAM Model Name: PF02040
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000802 Arsenical pump membrane protein, ArsB Protein Sequence Similarity - InterPro Domain: IPR000802
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.19 (transport; substrate; arsenite) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.A.4 (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The Arsenite-Antimonite (Ars) Efflux Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 5.6.2 (cell processes; protection; detoxification (xenobiotic metabolism)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12236 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0011437 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948011 Published Annotation - Entrez Gene Database ID: 948011
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0AB93 Published Annotation - Swiss-Prot Accession Number: P0AB93 Jan 2006
Automated Process Approved db xref GI:87082277 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AB93 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Drug/analog sensitivity Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note arsenical pump membrane protein; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0006805 - xenobiotic metabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76527.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0015700 arsenite transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000802
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0006805 xenobiotic metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000802
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0015105 arsenite transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000802
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0003384 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002667 arsB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002394 arsB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001914 arsB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002969 arsB CDS
Paralog
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0285126 yfjV pseudogene
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002373 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007326 CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001665 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004817 arsB CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007582 arsB CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005568 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006534 arsB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005361 CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003993 arsB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004644 arsB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006819 arsB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005235 arsB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008418 arsB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004806 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008186 arsB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006700 arsB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006245 arsB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005178 arsB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009685 arsB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005262 arsB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007499 arsB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005281 arsB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005347 arsB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005188 arsB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005077 arsB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005675 arsB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028552 arsB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008392 arsB CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003262 arsB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003868 arsB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004150 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004144 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003995 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003839 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003791 arsB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134446 arsB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002729 CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001276 CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002834 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001250 arsB CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001958 arsB CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002039 CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061856 arsB CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002745 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0003859 arsB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005445 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008767 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004807 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005889 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002737 CDS
Person Approved Go view Shigella boydii 227 ADV-0003821 arsB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009238 arsB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003363 arsB CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004033 arsB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075527 arsB CDS
Person Approved Go view Shigella flexneri 301 ABT-0089765 arsB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003731 arsB CDS
Person Approved Go view Shigella sonnei 046 ADD-0004072 arsB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003467 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001632 arsB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000629 arsB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000441 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234967 arsB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005051 arsB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003354 arsB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007135 arsB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0004007 arsB CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126594 arsB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006462 arsB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005953 arsB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000619 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005935 arsB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004289 arsB CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030481 arsB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007397 arsB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000908 arsB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003605 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004786 arsB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007297 arsB CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000827 arsB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000963 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004057 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0008558 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21246mutantTn5 InsertionRequest the StrainABE-0011437arsBarsB::Tn5KAN-I-SceI at position 267 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3643935 to 3655224
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0011421prlCCDScomplement36431403645182Upstream
ABE-0011428rlmJCDSforward36453853646227Upstream
ABE-0011432gorCDSforward36462993647651Upstream
ABE-0285195dinQCDScomplement36477053647788Upstream
ABE-0285789agrAncRNAforward36480633648146Upstream
ABE-0285790agrBncRNAforward36482943648377Upstream
ABE-0011435arsRCDSforward36485283648881Upstream
ABE-0011437arsBCDSforward36489353650224Matches
ABE-0011439arsCCDSforward36502373650662Downstream
ABE-0285612repeat_regionforward36507123650811Downstream
ABE-0011443yhiSpseudogeneforward36512913652036(Interval #1) Downstream
ABE-0011444is_elementforward36520363653230Downstream
ABE-0285613mobile_elementcomplement36520363653230Downstream
ABE-0011446insH11CDScomplement36521823653162Downstream
ABE-0011443yhiSpseudogeneforward36532363653713(Interval #2) Downstream
ABE-0011451slpCDSforward36539613654527Downstream
ABE-0011454dctRCDSforward36546833655213Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.