Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011527 (dctA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011527 showshow history
Names
dctA out JW3496 ECK3513 b3528
Product
C4 dicarboxylate/orotate:H+ symporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3682161 3683447 1287 429
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001337
EnteroFam0011527: Trusted threshold=1170.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR001991 (IPR001991 Sodium:dicarboxylate symporter) Apr 2008
Automated Process Approved IPR036458 (IPR036458 Sodium:dicarboxylate symporter superfamily) Jul 2018
Automated Process Approved PF00375 (PF00375 Sodium:dicarboxylate symporter family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006835 dicarboxylic acid transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001991
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001991, IPR036458
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001991
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0015293 symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001991, IPR036458
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO molecular function GO:0005311 (OBSOLETE) sodium:dicarboxylate/tricarboxylate symporter activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0017153 sodium:dicarboxylate symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001991
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name dctA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK3513 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW3496 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym out Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved locus tag b3528 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product C4 dicarboxylate/orotate:H+ symporter Published Annotation - EcoCyc Accession Number: EG20044
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Approved alternate product name uptake of C4-dicarboxylic acids Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name citrate and C4-dicarboxylic acids transport protein (DAACS family) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name C4-dicarboxylic acid, orotate and citrate transporter Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0011527: Trusted threshold=1170.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001337
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF00375 Sodium:dicarboxylate symporter family Protein Sequence Similarity - PFAM Model Name: PF00375
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036458 Sodium:dicarboxylate symporter superfamily Protein Sequence Similarity - InterPro Domain: IPR036458
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001991 Sodium:dicarboxylate symporter Protein Sequence Similarity - InterPro Domain: IPR001991
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 3.1.4 (regulation; type of regulation; regulation level unknown) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.2.A.23 (transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The Dicarboxylate/Amino Acid:Cation (Na+ or H+) Symporter (DAACS) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.134 (transport; substrate; Na+/dicarboxylate) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948039 Published Annotation - Entrez Gene Database ID: 948039
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0A830 Published Annotation - Swiss-Prot Accession Number: P0A830 Jan 2006
Automated Process Approved db xref GI:1789947 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A830 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0011527 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG20044 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Transport of small molecules: Carbohydrates, organic acids, alcohols Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note uptake of C4-dicarboxylic acids; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_function: GO:0005311 - sodium:dicarboxylate/tricarboxylate symporter activity; GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76553.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006835 dicarboxylic acid transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001991
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001991
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001991, IPR036458
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0015293 symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001991, IPR036458
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0017153 sodium:dicarboxylate symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001991
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0005311 (OBSOLETE) sodium:dicarboxylate/tricarboxylate symporter activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001337 dctA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000672 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001574 dctA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001566 dctA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002199 dctA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001581 dctA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001867 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000645 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004283 dctA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004280 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000246 dctA_1 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000746 dctA_1 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0009274 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017617 dctA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000085 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000047 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0306872 dctA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003830 dctA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003495 dctA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001350 dctA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004787 dctA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003666 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007551 dctA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003588 dctA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000650 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005537 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008292 dctA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005330 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080516 dctA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004025 dctA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005122 dctA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006848 dctA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005204 dctA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004010 dctA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008449 dctA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004842 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008223 dctA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006739 dctA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006285 dctA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005140 dctA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009726 dctA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005222 dctA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007538 dctA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005322 dctA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005387 dctA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005228 dctA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005117 dctA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005714 dctA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028588 dctA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005425 dctA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008420 dctA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004332 CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003841 dctA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004182 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004171 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004086 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004050 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178190 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003868 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003833 dctA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134480 dctA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002765 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004069 dctA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003555 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000567 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003926 dctA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002206 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0009012 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003246 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000185 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003371 dctA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000606 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000136 dctA CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0004247 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0007896 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003571 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0286368 dctA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007126 dctA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064700 dctA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002559 dctA CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0002285 dctA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000748 dctA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0004527 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0144178 dctA CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001712 dctA-1 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007989 dctA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004213 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004146 dctA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008237 dctA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011285 dctA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011675 dctA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005260 dctA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008288 dctA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005637 dctA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006165 dctA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006840 dctA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007383 dctA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008241 dctA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006607 dctA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003503 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003469 dctA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004509 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008409 dctA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004584 dctA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007878 dctA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004682 dctA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113807 dctA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085629 dctA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004357 dctA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0101190 dctA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005606 dctA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005204 dctA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000800 CDS
Person Approved Go view Shigella boydii 227 ADV-0003849 dctA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009355 dctA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003329 dctA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0005155 dctA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075496 dctA CDS
Person Approved Go view Shigella flexneri 301 ABT-0089787 dctA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003781 dctA CDS
Person Approved Go view Shigella sonnei 046 ADD-0004209 dctA CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0001476 dctA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000154 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011726 dctA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001189 dctA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001486 dctA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000713 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242353 dctA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008193 dctA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004555 dctA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007479 dctA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003401 dctA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128740 dctA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005873 dctA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007244 dctA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001406 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006104 dctA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007910 dctA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033630 dctA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006765 dctA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004372 dctA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004017 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006786 dctA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0008101 dctA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003950 dctA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004811 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000123 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0004456 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001189 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21256mutantTn5 InsertionRequest the StrainABE-0011527dctAdctA::Tn5KAN-I-SceI at position 377 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3677161 to 3688447
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0011512yhjGCDScomplement36762903678350Downstream
ABE-0011515pdeHCDScomplement36784203679187Downstream
ABE-0011519kdgKCDSforward36794193680348Downstream
ABE-0285617repeat_regionforward36803673680442Downstream
ABE-0011524yhjJCDScomplement36804443681940Downstream
ABE-0011527dctACDScomplement36821613683447Matches
ABE-0011533pdeKCDScomplement36836303685618Upstream
ABE-0011538bcsCCDScomplement36857003689173Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.