Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011564 (dppF) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011564 showshow history
Names
dppF JW3509 ECK3527 b3540
Product
ATP-binding component of an ABC superfamily dipeptide transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3701864 3702868 1005 335
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001338
EnteroFam0011564: Trusted threshold=435; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR010066 (IPR010066 (DEPRECATED) Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal) Apr 2008
Automated Process Approved IPR003439 (IPR003439 ABC transporter-like) Apr 2008
Automated Process Approved IPR003593 (IPR003593 AAA+ ATPase domain) Apr 2008
Automated Process Approved IPR013563 (IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal) Apr 2008
Automated Process Approved IPR027417 (IPR027417 P-loop containing nucleoside triphosphate hydrolase) Jul 2018
Automated Process Approved PF00005 (PF00005 ABC transporter) Jul 2018
Automated Process Approved PF08352 (PF08352 Oligopeptide/dipeptide transporter, C-terminal region) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009063 cellular amino acid catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0015833 peptide transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010066
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010066
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0015197 (DEPRECATED) peptide transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010066
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name dppF Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW3509 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK3527 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3540 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product ATP-binding component of an ABC superfamily dipeptide transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Approved alternate product name putative ATP-binding component of dipeptide transport system Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name dipeptide transport protein (ABC superfamily, atp_bind) Published Annotation - Database Name: GenProtEC Jan 2006
Automated Process Approved alternate product name dipeptide transporter Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Person Approved EnteroFam EnteroFam0011564: Trusted threshold=435; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001338
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR027417 P-loop containing nucleoside triphosphate hydrolase Protein Sequence Similarity - InterPro Domain: IPR027417
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF08352 Oligopeptide/dipeptide transporter, C-terminal region Protein Sequence Similarity - PFAM Model Name: PF08352
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00005 ABC transporter Protein Sequence Similarity - PFAM Model Name: PF00005
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR003593 AAA+ ATPase domain Protein Sequence Similarity - InterPro Domain: IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal Protein Sequence Similarity - InterPro Domain: IPR013563
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR003439 ABC transporter-like Protein Sequence Similarity - InterPro Domain: IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR010066 (DEPRECATED) Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal Protein Sequence Similarity - InterPro Domain: IPR010066
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 3.6.1.3 Published Annotation - Database Name: EC2GO: GO:0016887
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 1.1.3 (metabolism; carbon utilization; amino acids) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.47 (transport; substrate; dipeptide) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.A.1.a (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily ATP binding cytoplasmic component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948056 Published Annotation - Entrez Gene Database ID: 948056
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P37313 Published Annotation - Swiss-Prot Accession Number: P37313 Jan 2005
Automated Process Approved db xref GI:1789962 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P37313 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0011564 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12628 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Protein, peptide secretion Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note putative ATP-binding component of dipeptide transport system; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0009063 - cellular amino acid catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76565.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.12
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0015833 peptide transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010066
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009063 cellular amino acid catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010066
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0015197 (DEPRECATED) peptide transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010066
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001338 dppF CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000241 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001326 dppF CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001437 dppF CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002486 dppF CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001536 dppF CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001573 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001836 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004300 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004252 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000234 dppF_1 CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0000739 dppF CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0009295 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017600 dppF CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000075 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000498 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0306908 dppF CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003839 dppF CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003504 dppF CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001245 dppF CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004768 dppF CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003679 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007537 dppF CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003602 dppF CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000635 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005522 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008313 dppF CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005315 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080531 dppF CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004044 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005102 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006866 dppF CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005187 dppF CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004031 dppF CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008465 dppF CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004858 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008239 dppF CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006754 dppF CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006301 dppF CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005125 dppF CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009742 dppF CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005207 dppF CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007554 dppF CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005338 dppF CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005403 dppF CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005244 dppF CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005133 dppF CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005731 dppF CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028603 dppF CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005411 oppF_2 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008428 dppF CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004319 dppF CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003298 dppF CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003827 dppF CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004255 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004194 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004070 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004066 dppF CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178211 dppF CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003884 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003856 dppF CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134492 dppF CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002781 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004087 dppF CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003564 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000578 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003943 dppF CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002613 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0009031 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003228 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000198 dppF CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003363 dppF CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000616 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000127 dppF CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0004256 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0007878 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003560 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0286358 dppF CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007109 dppf3 CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064728 dppF CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002611 dppF CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0004028 dppF CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000770 dppF CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0004485 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0137456 dppF CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008005 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004199 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004157 dppF CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008253 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011333 dppF CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011631 dppF CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005244 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008304 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005653 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006149 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006856 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007399 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008257 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006591 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003517 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003482 dppF CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004526 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008424 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004569 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007893 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004699 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113778 dppF CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085615 dppF CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004376 dppF CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0101219 dppF CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005591 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005009 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005220 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000812 CDS
Person Approved Go view Shigella boydii 227 ADV-0003861 dppF CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009412 dppF CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003388 dppF CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0005172 dppF CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075484 dppF CDS
Person Approved Go view Shigella flexneri 301 ABT-0089800 dppF CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003767 dppF CDS
Person Approved Go view Shigella sonnei 046 ADD-0004195 dppF CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0003374 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0008054 dppF CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001313 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011764 dppE CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001203 dppF CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003653 dppF CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001745 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242370 dppF CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008186 dppF CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004564 dppF CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007486 dppF CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003396 dppF CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128765 dppF CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005866 dppF CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007237 dppF CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001399 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006111 dppF CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007903 dppF CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033624 dppF CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006758 dppF CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004381 dppF CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004026 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006793 dppF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0008108 dppF CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003956 dppF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004821 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000113 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0004519 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001175 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21266mutantTn5 InsertionRequest the StrainABE-0011564dppFdppF::Tn5KAN-I-SceI at position 329 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3696864 to 3707868
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0011554bcsECDSforward36964583698029Downstream
ABE-0011556bcsFCDSforward36980263698217Downstream
ABE-0011558bcsGCDSforward36982143699893Downstream
ABE-0047284ldrDCDScomplement36999803700087Downstream
ABE-0047273rdlDncRNAforward37001363700199Downstream
ABE-0011562yhjVCDSforward37005633701834Downstream
ABE-0011564dppFCDScomplement37018643702868Matches
ABE-0011566dppDCDScomplement37028653703848Overlaps Upstream
ABE-0011570dppCCDScomplement37038593704761Upstream
ABE-0011572dppBCDScomplement37047713705790Upstream
ABE-0285618repeat_regionforward37059633706060Upstream
ABE-0011576dppACDScomplement37060983707705Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.