Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011566 (dppD) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011566 showshow history
Names
dppD JW3510 ECK3528 b3541
Product
ATP-binding component of an ABC superfamily dipeptide transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3702865 3703848 984 328
Sequence

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001339
EnteroFam0011566: Trusted threshold=954.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR010066 (IPR010066 (DEPRECATED) Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal) Apr 2008
Automated Process Approved IPR003439 (IPR003439 ABC transporter-like) Apr 2008
Automated Process Approved IPR003593 (IPR003593 AAA+ ATPase domain) Apr 2008
Automated Process Approved IPR013563 (IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal) Apr 2008
Automated Process Approved IPR027417 (IPR027417 P-loop containing nucleoside triphosphate hydrolase) Jul 2018
Automated Process Approved PF08352 (PF08352 Oligopeptide/dipeptide transporter, C-terminal region) Jul 2018
Automated Process Approved PF00005 (PF00005 ABC transporter) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009063 cellular amino acid catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0015833 peptide transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010066
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0015197 (DEPRECATED) peptide transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010066
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010066
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name dppD Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK3528 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW3510 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3541 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product ATP-binding component of an ABC superfamily dipeptide transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Approved alternate product name putative ATP-binding component of dipeptide transport system Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name dipeptide transport protein (ABC superfamily, atp_bind) Published Annotation - Database Name: GenProtEC Jan 2006
Automated Process Approved alternate product name dipeptide/heme transporter Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Person Approved EnteroFam EnteroFam0011566: Trusted threshold=954.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001339
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF08352 Oligopeptide/dipeptide transporter, C-terminal region Protein Sequence Similarity - PFAM Model Name: PF08352
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal Protein Sequence Similarity - InterPro Domain: IPR013563
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00005 ABC transporter Protein Sequence Similarity - PFAM Model Name: PF00005
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR027417 P-loop containing nucleoside triphosphate hydrolase Protein Sequence Similarity - InterPro Domain: IPR027417
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR003439 ABC transporter-like Protein Sequence Similarity - InterPro Domain: IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR003593 AAA+ ATPase domain Protein Sequence Similarity - InterPro Domain: IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR010066 (DEPRECATED) Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal Protein Sequence Similarity - InterPro Domain: IPR010066
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 3.6.1.3 Published Annotation - Database Name: EC2GO: GO:0016887
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 1.1.3 (metabolism; carbon utilization; amino acids) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.A.1.a (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily ATP binding cytoplasmic component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.47 (transport; substrate; dipeptide) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AAG0 Published Annotation - Swiss-Prot Accession Number: P0AAG0 Jan 2006
Automated Process Approved db xref GeneID:948065 Published Annotation - Entrez Gene Database ID: 948065
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1789963 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AAG0 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0011566 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12627 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Protein, peptide secretion Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note putative ATP-binding component of dipeptide transport system; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0009063 - cellular amino acid catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76566.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 3.91
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 5.76
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0015833 peptide transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010066
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009063 cellular amino acid catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0015197 (DEPRECATED) peptide transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010066
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010066
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001339 dppD CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000242 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001327 dppD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001393 dppD CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002485 dppD CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001541 dppD CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001574 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001837 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004301 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004253 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000233 dppD CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000738 dppD CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0009296 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0018418 dppD CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000074 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000497 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0306913 dppD CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003840 dppD CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003505 dppD CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001244 dppD CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004767 dppD CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003680 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007536 dppD CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003603 dppD CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000634 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005521 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008314 dppD CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005314 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080532 dppD CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004045 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005101 dppD CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006867 dppD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005186 dppD CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004032 dppD CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008466 dppD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004859 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008240 dppD CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006755 dppD CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006302 dppD CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005124 dppD CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009743 dppD CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005206 dppD CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007555 dppD CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005339 dppD CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005404 dppD CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005245 dppD CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005134 dppD CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005732 dppD CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028604 dppD CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005410 oppD_2 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008429 dppD CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004318 dppD CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003299 dppD CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003826 dppD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004254 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004195 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004069 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004067 dppD CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178212 dppD CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003885 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003857 dppD CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134493 dppD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002782 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004088 dppD CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003565 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000579 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003944 dppD CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002612 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0009032 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003227 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000199 dppD CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003362 dppD CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000617 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000126 dppD CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0004257 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0007877 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003559 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0286357 dppD CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007108 dppd3 CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064729 dppD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002594 dppD CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0004029 dppD CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000771 dppD CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0004484 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0137455 dppD CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004640 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008006 dppD CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004198 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004158 dppD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008254 dppD CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011338 dppD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005243 dppD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008305 dppD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005654 dppD CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006148 dppD CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006857 dppD CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007400 dppD CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008258 dppD CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006590 dppD CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003518 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003483 dppD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004527 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008425 dppD CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004568 dppD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007894 dppD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004700 dppD CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113773 dppD CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085614 dppD CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004377 dppD CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0101221 dppD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005590 dppD CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005008 dppD CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005221 dppD CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000813 CDS
Person Approved Go view Shigella boydii 227 ADV-0003862 dppD CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009411 dppD CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003389 dppD CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0005173 dppD CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075483 dppD CDS
Person Approved Go view Shigella flexneri 301 ABT-0089801 dppD CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003766 dppD CDS
Person Approved Go view Shigella sonnei 046 ADD-0004194 dppD CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0003375 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0008056 dppD CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001312 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011768 dppD CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001204 dppD CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003654 dppD CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001746 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242371 dppD CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008185 dppD CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004565 dppD CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007487 dppD CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003395 dppD CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128769 dppD CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005865 dppD CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007236 dppD CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006112 dppD CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007902 dppD CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033623 dppD CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006757 dppD CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004382 dppD CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004027 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006794 dppD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0008109 dppD CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003957 dppD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004822 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000112 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0004530 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001174 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3697865 to 3708848
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0011554bcsECDSforward36964583698029Downstream
ABE-0011556bcsFCDSforward36980263698217Downstream
ABE-0011558bcsGCDSforward36982143699893Downstream
ABE-0047284ldrDCDScomplement36999803700087Downstream
ABE-0047273rdlDncRNAforward37001363700199Downstream
ABE-0011562yhjVCDSforward37005633701834Downstream
ABE-0011564dppFCDScomplement37018643702868Overlaps Downstream
ABE-0011566dppDCDScomplement37028653703848Matches
ABE-0011570dppCCDScomplement37038593704761Upstream
ABE-0011572dppBCDScomplement37047713705790Upstream
ABE-0285618repeat_regionforward37059633706060Upstream
ABE-0011576dppACDScomplement37060983707705Upstream
ABE-0285619repeat_regionforward37082723708357Upstream
ABE-0011579proKtRNAcomplement37086163708692Upstream
ABE-0011581eptBCDScomplement37087843710475Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.