Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011570 (dppC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011570 showshow history
Names
dppC JW3511 ECK3529 b3542
Product
membrane component of an ABC superfamily dipeptide transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3703859 3704761 903 301
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001340
EnteroFam0011570: Trusted threshold=849.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR000515 (IPR000515 ABC transporter type 1, transmembrane domain MetI-like) Apr 2008
Automated Process Approved IPR025966 (IPR025966 Oligopeptide transport permease C-like, N-terminal domain) Jul 2018
Automated Process Approved IPR035906 (IPR035906 MetI-like superfamily) Jul 2018
Automated Process Approved PF00528 (PF00528 Binding-protein-dependent transport system inner membrane component) Jul 2018
Automated Process Approved PF12911 (PF12911 N-terminal TM domain of oligopeptide transport permease C) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000515
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name dppC Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK3529 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW3511 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3542 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product membrane component of an ABC superfamily dipeptide transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Automated Process Approved alternate product name dipeptide/heme transporter Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved alternate product name dipeptide transport system permease protein 2 Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name dipeptide transport protein 2 (ABC superfamily, membrane) Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0011570: Trusted threshold=849.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001340
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR025966 Oligopeptide transport permease C-like, N-terminal domain Protein Sequence Similarity - InterPro Domain: IPR025966
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00528 Binding-protein-dependent transport system inner membrane component Protein Sequence Similarity - PFAM Model Name: PF00528
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000515 ABC transporter type 1, transmembrane domain MetI-like Protein Sequence Similarity - InterPro Domain: IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF12911 N-terminal TM domain of oligopeptide transport permease C Protein Sequence Similarity - PFAM Model Name: PF12911
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR035906 MetI-like superfamily Protein Sequence Similarity - InterPro Domain: IPR035906
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.47 (transport; substrate; dipeptide) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.A.1.m (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily, membrane component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.2.3 (metabolism; macromolecule degradation; proteins/peptides/glycopeptides) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948064 Published Annotation - Entrez Gene Database ID: 948064
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0AEG1 Published Annotation - Swiss-Prot Accession Number: P0AEG1 Jan 2006
Automated Process Approved db xref GI:1789964 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AEG1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12626 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0011570 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Protein, peptide secretion Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note dipeptide transport system permease protein 2; membrane component of ABC superfamily; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76567.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000515
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001340 dppC CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000243 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001248 dppC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001350 dppC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002113 dppC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001573 dppC CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001575 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001838 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004302 dppC CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004254 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000232 dppC CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000737 dppC CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0009297 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0018417 dppC CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000073 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000496 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0306918 dppC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003841 dppC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003506 dppC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001243 dppC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004766 dppC CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003681 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007535 dppC CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003604 dppC CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000633 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005520 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008315 dppC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005313 dppC CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080533 dppC CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004046 dppC CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005100 dppC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006868 dppC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005185 dppC CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004033 dppC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008467 dppC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004860 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008241 dppC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006756 dppC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006303 dppC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005123 dppC CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009744 dppC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005205 dppC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007556 dppC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005340 dppC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005405 dppC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005246 dppC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005135 dppC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005733 dppC CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028605 dppC CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005409 dppC CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008430 dppC CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004317 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003300 dppC CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003825 dppC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004253 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004196 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004068 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004068 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178213 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003886 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003858 dppC CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134494 dppC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002783 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004089 dppC CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003566 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000580 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003945 dppC CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002611 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0009033 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003226 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000200 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003361 dppC CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000618 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000125 dppC CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0004258 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0007876 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003558 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0286356 dppC CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007107 dppc3 CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064730 dppC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002599 dppC CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0004030 dppC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000772 dppC CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0004483 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0137452 dppC CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004639 dppC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008007 dppC CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004197 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004160 dppC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008255 dppC CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011343 dppC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011625 dppC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005242 dppC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008306 dppC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005655 dppC CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006147 dppC CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006858 dppC CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007401 dppC CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008259 dppC CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006589 dppC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003519 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003484 dppC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004528 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008426 dppC CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004567 dppC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007895 dppC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004701 dppC CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113770 dppC CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085613 dppC CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004378 dppC CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0101225 dppC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005589 dppC CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005007 dppC CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005222 dppC CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000814 CDS
Person Approved Go view Shigella boydii 227 ADV-0003863 dppC CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009410 dppC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003390 dppC CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0005174 dppC CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075482 dppC CDS
Person Approved Go view Shigella flexneri 301 ABT-0089802 dppC CDS
Person Approved Go view Shigella sonnei 046 ADD-0004193 dppC CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0003376 dppC CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000189 VC0173 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0008057 dppC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001311 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011772 dppC CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001205 dppC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003655 dppC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001747 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242372 dppC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008184 dppC CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004566 dppC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007488 dppC CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003394 dppC CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128773 dppC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005864 dppC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007235 dppC CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003577 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006113 dppC CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007901 dppC CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033622 dppC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006756 dppC CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004383 dppC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004028 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006795 dppC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0008110 dppC CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003958 dppC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004823 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000111 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0004541 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001173 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21267mutantTn5 InsertionRequest the StrainABE-0011570dppCdppC::Tn5KAN-I-SceI at position 201 in Plus orientation ,+ pKD460Blattner Laboratory
FB21268mutantTn5 InsertionRequest the StrainABE-0011570dppCdppC::Tn5KAN-I-SceI at position 201 in Plus orientation ,- pKD465Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3698859 to 3709761
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0011558bcsGCDSforward36982143699893Downstream
ABE-0047284ldrDCDScomplement36999803700087Downstream
ABE-0047273rdlDncRNAforward37001363700199Downstream
ABE-0011562yhjVCDSforward37005633701834Downstream
ABE-0011564dppFCDScomplement37018643702868Downstream
ABE-0011566dppDCDScomplement37028653703848Downstream
ABE-0011570dppCCDScomplement37038593704761Matches
ABE-0011572dppBCDScomplement37047713705790Upstream
ABE-0285618repeat_regionforward37059633706060Upstream
ABE-0011576dppACDScomplement37060983707705Upstream
ABE-0285619repeat_regionforward37082723708357Upstream
ABE-0011579proKtRNAcomplement37086163708692Upstream
ABE-0011581eptBCDScomplement37087843710475Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.