Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011572 (dppB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011572 showshow history
Names
dppB JW3512 ECK3530 b3543
Product
membrane component of an ABC superfamily dipeptide transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3704771 3705790 1020 340
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001341
EnteroFam0011572: Trusted threshold=878.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR000515 (IPR000515 ABC transporter type 1, transmembrane domain MetI-like) Apr 2008
Automated Process Approved IPR035906 (IPR035906 MetI-like superfamily) Jul 2018
Automated Process Approved PF00528 (PF00528 Binding-protein-dependent transport system inner membrane component) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000515
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name dppB Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK3530 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW3512 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3543 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product membrane component of an ABC superfamily dipeptide transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Uncurated alternate product name dipeptide transport protein 1 (ABC superfamily, membrane) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name dipeptide transport system permease protein 1 Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Automated Process Approved alternate product name dipeptide/heme transporter Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Person Approved EnteroFam EnteroFam0011572: Trusted threshold=878.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001341
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR000515 ABC transporter type 1, transmembrane domain MetI-like Protein Sequence Similarity - InterPro Domain: IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR035906 MetI-like superfamily Protein Sequence Similarity - InterPro Domain: IPR035906
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00528 Binding-protein-dependent transport system inner membrane component Protein Sequence Similarity - PFAM Model Name: PF00528
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated MultiFun 4.3.A.1.m (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily, membrane component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.47 (transport; substrate; dipeptide) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.2.3 (metabolism; macromolecule degradation; proteins/peptides/glycopeptides) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AEF8 Published Annotation - Swiss-Prot Accession Number: P0AEF8 Jan 2006
Automated Process Approved db xref GeneID:948063 Published Annotation - Entrez Gene Database ID: 948063
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1789965 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AEF8 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0011572 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12625 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Protein, peptide secretion Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note dipeptide transport system permease protein 1; membrane component of ABC superfamily; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76568.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000515
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001341 dppB CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000244 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001731 dppB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001559 dppB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002112 dppB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001424 dppB CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001576 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001839 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004303 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004255 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000231 dppB CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000736 dppB CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0009298 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0018416 dppB CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000072 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000495 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0306921 dppB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003842 dppB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003507 dppB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001242 dppB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004765 dppB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003682 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007534 dppB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003605 dppB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000632 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005519 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008316 dppB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005312 DppB CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080534 dppB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004047 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005099 dppB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006869 dppB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005184 dppB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004034 dppB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008468 dppB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004861 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008242 dppB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006757 dppB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006304 dppB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005122 dppB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009745 dppB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005204 dppB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007557 dppB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005341 dppB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005406 dppB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005247 dppB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005136 dppB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005734 dppB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028606 dppB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005408 dppB_1 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008431 dppB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004316 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003301 dppB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003824 dppB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004252 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004197 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004067 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004069 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003887 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003859 dppB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134495 dppB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002784 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004090 dppB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003567 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000581 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003946 dppB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002610 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0009034 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003225 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000201 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003360 dppB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000619 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000124 dppB CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0004259 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0007875 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003557 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0286355 dppB CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007106 dppb3 CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064731 dppB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002595 dppB CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0004031 dppB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000773 dppB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0004482 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0137449 dppB CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004638 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008008 dppB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004196 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004161 dppB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008256 dppB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011346 dppB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011621 dppB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005241 dppB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008307 dppB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005656 dppB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006146 dppB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006859 dppB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007402 dppB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008260 dppB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006588 dppB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003520 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003485 dppB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004529 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008427 dppB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004566 dppB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007896 dppB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004702 dppB CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113767 dppB CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085612 dppB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004379 dppB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0101228 dppB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005588 dppB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005006 dppB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005223 dppB CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000815 CDS
Person Approved Go view Shigella boydii 227 ADV-0003864 dppB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009409 dppB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003391 dppB CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0005175 dppB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075481 dppB CDS
Person Approved Go view Shigella flexneri 301 ABT-0089803 dppB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003764 dppB CDS
Person Approved Go view Shigella sonnei 046 ADD-0004192 dppB CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0003377 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0008058 dppB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001310 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011775 dppB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001206 dppB_2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003656 dppB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001748 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242378 dppB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004567 dppB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003393 dppB CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128780 dppB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003575 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033620 dppB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004384 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004029 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0008111 dppB CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003959 dppB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004824 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000110 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0004549 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001172 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21269mutantTn5 InsertionRequest the StrainABE-0011572dppBdppB::Tn5KAN-I-SceI at position 731 in Plus orientation ,+ pKD460Blattner Laboratory
FB21270mutantTn5 InsertionRequest the StrainABE-0011572dppBdppB::Tn5KAN-I-SceI at position 731 in Plus orientation ,- pKD465Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3699771 to 3710790
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0011558bcsGCDSforward36982143699893Downstream
ABE-0047284ldrDCDScomplement36999803700087Downstream
ABE-0047273rdlDncRNAforward37001363700199Downstream
ABE-0011562yhjVCDSforward37005633701834Downstream
ABE-0011564dppFCDScomplement37018643702868Downstream
ABE-0011566dppDCDScomplement37028653703848Downstream
ABE-0011570dppCCDScomplement37038593704761Downstream
ABE-0011572dppBCDScomplement37047713705790Matches
ABE-0285618repeat_regionforward37059633706060Upstream
ABE-0011576dppACDScomplement37060983707705Upstream
ABE-0285619repeat_regionforward37082723708357Upstream
ABE-0011579proKtRNAcomplement37086163708692Upstream
ABE-0011581eptBCDScomplement37087843710475Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.