Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011581 (eptB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011581 showshow history
Names
eptB pagC yhjW JW5660 ECK3533 b3546
Product
phosphoethanolamine transferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3708784 3710475 1692 564
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001342
EnteroFam0011581: Trusted threshold=1359.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR012549 (IPR012549 Phosphoethanolamine transferase, N-terminal) Apr 2008
Automated Process Approved IPR000917 (IPR000917 Sulfatase, N-terminal) Apr 2008
Automated Process Approved IPR001952 (IPR001952 Alkaline phosphatase) Apr 2008
Automated Process Approved IPR017850 (IPR017850 Alkaline-phosphatase-like, core domain superfamily) Jul 2018
Automated Process Approved PF00884 (PF00884 Sulfatase) Jul 2018
Automated Process Approved PF08019 (PF08019 Phosphoethanolamine transferase EptA/EptB) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000917
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012549
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR017850
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0008484 sulfuric ester hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000917
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name eptB Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK3533 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym pagC Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW5660 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym yhjW Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Approved locus tag b3546 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product phosphoethanolamine transferase Published Annotation - EcoCyc Accession Number: EG12267
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Automated Process Approved alternate product name KDO phosphoethanolamine transferase, Ca(2+)-inducible Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved alternate product name predicted metal dependent hydrolase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name putative transmembrane protein Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0011581: Trusted threshold=1359.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001342
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR012549 Phosphoethanolamine transferase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR012549
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000917 Sulfatase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR000917
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00884 Sulfatase Protein Sequence Similarity - PFAM Model Name: PF00884
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001952 Alkaline phosphatase Protein Sequence Similarity - InterPro Domain: IPR001952
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF08019 Phosphoethanolamine transferase EptA/EptB Protein Sequence Similarity - PFAM Model Name: PF08019
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR017850 Alkaline-phosphatase-like, core domain superfamily Protein Sequence Similarity - InterPro Domain: IPR017850
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Uncurated EC number 3.1.6.- Published Annotation - Database Name: EC2GO: GO:0008484
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated EC number 3.1.3.1 Protein Sequence Similarity - InterPro Domain: IPR001952
Reference: Escherichia coli K-12 MG1655 		Dec 2008
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P37661 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:87082286 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P37661 Published Annotation - Swiss-Prot Accession Number: P37661 Jan 2005
Automated Process Approved db xref EcoGene:EG12267 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948068 Published Annotation - Entrez Gene Database ID: 948068
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref ASAP:ABE-0011581 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note GO_component: GO:0009274 - peptidoglycan-based cell wall Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76570.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000917
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012549
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008484 sulfuric ester hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000917
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR017850
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001342 eptB CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002095 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001928 eptB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001935 eptB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000063 eptB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001732 eptB CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004305 eptB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004257 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000226 eptb_1 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000732 eptB CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0009360 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0016330 eptB CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000493 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0306929 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003847 yhjW CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003509 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001238 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004760 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003687 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007529 yhjW CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003608 yhjW CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000629 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005514 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006945 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005306 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080541 eptB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004053 eptB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005094 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006874 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005178 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004037 eptB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008474 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004864 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008247 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006762 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006309 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005117 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009750 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005199 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007562 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005346 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005411 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005252 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005141 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005739 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028609 eptB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005403 eptB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008436 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004313 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003303 eptB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003821 eptB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004250 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004199 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004064 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004075 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178220 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003891 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003864 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134498 eptB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002787 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004095 yhjW CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003572 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003952 yhjW CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002608 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003223 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000203 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003357 yhjW CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000622 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000121 yhjW CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0004262 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0007873 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003554 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0286352 eptB CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007103 yhjW CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060245 eptB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003371 CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003410 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000150 eptB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009529 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008015 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004192 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004171 eptB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008264 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011363 yhjW CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011606 yhjW CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005233 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008315 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005664 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006138 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006868 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007411 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008268 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006580 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003526 yhjW CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004537 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008436 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004557 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007904 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004710 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113752 eptB CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085605 eptB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004388 yhjW CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0101246 eptB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005580 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004998 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005231 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000824 CDS
Person Approved Go view Shigella boydii 227 ADV-0003867 yhjW CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009404 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003395 CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075476 eptB CDS
Person Approved Go view Shigella flexneri 301 ABT-0089806 eptB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003761 yhjW CDS
Person Approved Go view Shigella sonnei 046 ADD-0004189 eptB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001304 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011805 yhjW CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001213 yhjW CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002665 eptB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001755 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242406 eptB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008260 eptB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004888 eptB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007288 eptB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003384 CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128829 eptB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005852 eptB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007223 eptB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001896 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006125 eptB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006910 eptB CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033832 eptB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006744 eptB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004398 eptB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004040 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007841 eptB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0008119 eptB CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003967 eptB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004836 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000098 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0004571 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001168 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3703784 to 3715475
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0011566dppDCDScomplement37028653703848Downstream
ABE-0011570dppCCDScomplement37038593704761Downstream
ABE-0011572dppBCDScomplement37047713705790Downstream
ABE-0285618repeat_regionforward37059633706060Downstream
ABE-0011576dppACDScomplement37060983707705Downstream
ABE-0285619repeat_regionforward37082723708357Downstream
ABE-0011579proKtRNAcomplement37086163708692Downstream
ABE-0011581eptBCDScomplement37087843710475Matches
ABE-0011586yhjXCDScomplement37107993712007Upstream
ABE-0011589yhjYCDScomplement37122363712934Upstream
ABE-0011593tagCDSforward37130923713655Upstream
ABE-0011595yiaCCDSforward37136523714092Upstream
ABE-0011597bisCCDScomplement37140613716394Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.