Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011597 (bisC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011597 showshow history
Names
bisC JW5940 ECK3538 b3551
Product
biotin sulfoxide reductase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3714061 3716394 2334 778
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006658 (IPR006658 Molybdopterin guanine dinucleotide-containing S/N-oxide reductase) Apr 2008
Automated Process Approved IPR006655 (IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site) Apr 2008
Automated Process Approved IPR009010 (IPR009010 Aspartate decarboxylase-like domain superfamily) Apr 2008
Automated Process Approved IPR006657 (IPR006657 Molybdopterin dinucleotide-binding domain) Apr 2008
Automated Process Approved IPR006656 (IPR006656 Molybdopterin oxidoreductase) Apr 2008
Automated Process Approved PF00384 (PF00384 Molybdopterin oxidoreductase) Jul 2018
Automated Process Approved PF01568 (PF01568 Molydopterin dinucleotide binding domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006656, IPR006657, IPR006658
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006658
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009102 biotin biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0043546 molybdopterin cofactor binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006657
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0030151 molybdenum ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006657
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006658
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name bisC Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW5940 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK3538 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3551 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product biotin sulfoxide reductase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name biotin sulfoxide reductase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family IPR006656 Molybdopterin oxidoreductase Protein Sequence Similarity - InterPro Domain: IPR006656
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006658 Molybdopterin guanine dinucleotide-containing S/N-oxide reductase Protein Sequence Similarity - InterPro Domain: IPR006658
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01568 Molydopterin dinucleotide binding domain Protein Sequence Similarity - PFAM Model Name: PF01568
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR009010 Aspartate decarboxylase-like domain superfamily Protein Sequence Similarity - InterPro Domain: IPR009010
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006657 Molybdopterin dinucleotide-binding domain Protein Sequence Similarity - InterPro Domain: IPR006657
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00384 Molybdopterin oxidoreductase Protein Sequence Similarity - PFAM Model Name: PF00384
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site Protein Sequence Similarity - InterPro Domain: IPR006655
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 1.-.-.- Published Annotation - Swiss-Prot Accession Number: P20099 Feb 2006
Person Uncurated MultiFun 1.5.3.1 (metabolism; building block biosynthesis; cofactor, small molecule carrier; biotin) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved comment The coordinates of bisC have been changed from those reported in the GenBank entry (GBAN:U00096.2) to correspond to the start site predicted by a published sequence analysis, adding 18 codons to the N-terminus. Published Sequence Analysis - PubMed ID: 15601707
Reference: Escherichia coli K-12 MG1655 		Apr 2007
Automated Process Approved db xref EcoGene:EG10124 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:145693196 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P20099 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P20099 Published Annotation - Swiss-Prot Accession Number: P20099 Jan 2005
Automated Process Approved db xref ASAP:ABE-0011597 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946915 Published Annotation - Entrez Gene Database ID: 946915
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved function enzyme; Biosynthesis of cofactors, carriers: Biotin Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_process: GO:0009102 - biotin biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76575.3 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved subcellular localization Periplasmic Predicted by PSORTb - PSORTb Final_Score: 9.44
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006656, IPR006657, IPR006658
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006658
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009102 biotin biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0043546 molybdopterin cofactor binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006657
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0030151 molybdenum ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006657
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006658
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000061 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000020 torZ CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000023 torZ CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000028 torZ CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000008 torZ CDS
Ortholog
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000221 bisC_1 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000727 bisC_1 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003693 CDS
Person Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007523 bisC CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003613 bisC CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000624 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005507 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080546 bisC CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004058 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005082 CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008479 bisC CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009761 bisC CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028621 bisC CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005398 bisC CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008441 bisC CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004308 bisC CDS
Person Approved Go view Escherichia coli K-12 DH10B AEC-0003308 bisC CDS
Automated Process Approved Go view Escherichia coli K-12 W3110 ADY-0003816 bisC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004239 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004205 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004058 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004080 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178225 bisC CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003896 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003869 bisC CDS
Automated Process Approved Go view Escherichia coli Sakai (EHEC) ACA-0134509 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004100 bisC CDS
Person Uncurated Go view Salmonella Agona SL483 BBX-0008025 CDS
Person Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004188 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004181 CDS
Person Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008274 CDS
Person Uncurated Go view Salmonella Enteritidis P125109 BCF-0011398 bisC CDS
Person Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011574 bisC CDS
Person Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005223 CDS
Person Uncurated Go view Salmonella Heidelberg SL476 BBV-0008324 CDS
Person Uncurated Go view Salmonella Heidelberg SL486 BBW-0005673 CDS
Person Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006134 CDS
Person Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006877 CDS
Person Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007421 CDS
Person Uncurated Go view Salmonella Newport SL254 BBQ-0008278 CDS
Person Uncurated Go view Salmonella Newport SL317 BBR-0006571 CDS
Person Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003531 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003495 bisC CDS
Person Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004547 CDS
Person Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008445 CDS
Person Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004547 CDS
Person Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007908 CDS
Person Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004714 CDS
Automated Process Approved Go view Salmonella Typhi CT18 ABX-0113739 bisC CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0085601 bisC CDS
Person Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0101271 bisC CDS
Person Uncurated Go view Salmonella Virchow SL491 BBS-0005571 CDS
Person Uncurated Go view Salmonella Weltevreden SL484 BBU-0004994 CDS
Person Uncurated Go view Salmonella enterica CVM23701 BBL-0005241 CDS
Automated Process Approved Go view Shigella boydii 227 ADV-0003876 bisC CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009396 bisC CDS
Person Uncurated Go view Shigella dysenteriae 197 ADU-0004918 bisC pseudogene
Automated Process Approved Go view Shigella flexneri 2457T ABQ-0075471 bisC CDS
Automated Process Approved Go view Shigella flexneri 301 ABT-0089811 bisC CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003756 bisC CDS
Automated Process Approved Go view Shigella sonnei 046 ADD-0004184 bisC CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0003386 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21274mutantTn5 InsertionRequest the StrainABE-0011597bisCbisC::Tn5KAN-I-SceI at position 308 in Minus orientation ,- pKD465Blattner Laboratory
FB21275mutantTn5 InsertionRequest the StrainABE-0011597bisCbisC::Tn5KAN-I-SceI at position 308 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3709061 to 3721394
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0011581eptBCDScomplement37087843710475Downstream
ABE-0011586yhjXCDScomplement37107993712007Downstream
ABE-0011589yhjYCDScomplement37122363712934Downstream
ABE-0011593tagCDSforward37130923713655Downstream
ABE-0011595yiaCCDSforward37136523714092Overlaps Downstream
ABE-0011597bisCCDScomplement37140613716394Matches
ABE-0011601yiaDCDSforward37165473717206Upstream
ABE-0011604ghrBCDSforward37173103718284Upstream
ABE-0011606yiaFCDScomplement37183343719044Upstream
ABE-0011612yiaGCDSforward37194783719768Upstream
ABE-0011616cspACDSforward37200493720261Upstream
ABE-0285739ysaECDSforward37204003720471Upstream
ABE-0047285hokACDScomplement37204483720600Upstream
ABE-0285256mokApseudogenecomplement37204483720632Upstream
ABE-0011618mobile_elementforward37206333722075Upstream
ABE-0011620insJCDSforward37206803721201Upstream
ABE-0011622insKCDSforward37211983722049Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.