Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011604 (ghrB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011604 showshow history
Names
ghrB JW5656 tiaE ECK3540 yiaE tkrA b3553
Product
glyoxylate/hydroxypyruvate reductase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3717310 3718284 975 325
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001344
EnteroFam0011604: Trusted threshold=795.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR006140 (IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain) Apr 2008
Automated Process Approved IPR006139 (IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain) Apr 2008
Automated Process Approved IPR036291 (IPR036291 NAD(P)-binding domain superfamily) Jul 2018
Automated Process Approved PF00389 (PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain) Jul 2018
Automated Process Approved PF02826 (PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006139, IPR006140
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006139
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0051287 NAD binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006139
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0048037 (OBSOLETE) cofactor binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006140
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006140
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ghrB Published Annotation in EcoGene - EG Number: EG12272
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved synonym tkrA Published Annotation - Swiss-Prot Accession Number: P37666 Aug 2002
Person Approved synonym yiaE Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW5656 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym tiaE Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK3540 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3553 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product glyoxylate/hydroxypyruvate reductase Experimental - PubMed ID: 11237876
Reference: Escherichia coli K-12 		Jul 2008
Person Uncurated alternate product name 2-ketoaldonate reductase Experimental - PubMed ID: 9811658
Reference: Escherichia coli K-12 W3110 		Jul 2008
Person Uncurated alternate product name 2-keto-D-gluconate reductase Experimental - PubMed ID: 9811658
Reference: Escherichia coli K-12 W3110 		Jul 2008
Automated Process Approved alternate product name glyoxylate/hydroxypyruvate reductase B Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Person Approved EnteroFam EnteroFam0011604: Trusted threshold=795.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001344
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Protein Sequence Similarity - PFAM Model Name: PF00389
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain Protein Sequence Similarity - InterPro Domain: IPR006140
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036291 NAD(P)-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036291
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Protein Sequence Similarity - InterPro Domain: IPR006139
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Protein Sequence Similarity - PFAM Model Name: PF02826
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 1.1.1.79 Published Annotation - Database Name: GenProtEC Jul 2002
Person Approved EC number 1.1.1.215 Published Annotation - Swiss-Prot Accession Number: P37666 Feb 2006
Automated Process Uncurated EC number 1.1.1.- Published Annotation - Database Name: EC2GO: GO:0016616
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12272 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P37666 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P37666 Published Annotation - Swiss-Prot Accession Number: P37666 Jan 2005
Automated Process Approved db xref ASAP:ABE-0011604 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:87082289 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948074 Published Annotation - Entrez Gene Database ID: 948074
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76577.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.97
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006139, IPR006140
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006139
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006140
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0051287 NAD binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006139
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0048037 (OBSOLETE) cofactor binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006140
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001344 ghrB CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000251 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001457 ghrB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001578 ghrB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001684 ghrB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001599 ghrB CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001556 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001046 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004152 ghrB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004236 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000215 tkrA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000721 tkrA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004425 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0016151 tkrA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0004210 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000481 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0307055 tkrA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003898 yiaE CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003550 tkrA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001252 tkrA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004753 tkrA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003695 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007521 tkrA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003615 tkrA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000622 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005504 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006957 tkrA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005299 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080549 ghrB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004060 ghrB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005080 ghrB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006881 tkrA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005166 tkrA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004049 ghrB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008482 tkrA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004878 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008260 tkrA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006775 tkrA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006322 tkrA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005104 tkrA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009763 tkrA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005186 tkrA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007575 tkrA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005360 tkrA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005425 tkrA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005267 tkrA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005154 tkrA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005753 tkrA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028623 ghrB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005396 ghrB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008443 tkrA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004306 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003310 tiaE CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003814 tiaE CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004237 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004207 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004056 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004083 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003898 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003871 tkrA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134511 ghrB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002802 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004102 yiaE CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003635 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003963 tkrA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002597 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004419 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003160 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003349 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003314 tkrA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000670 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000078 tkrA CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000014 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0007791 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003499 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0286302 ghrB CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007050 yiaE CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060279 ghrB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000051 tkrA CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000025 tkrA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000186 ghrB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009486 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001244 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008027 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004183 ghrB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008276 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011410 yiaE CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011564 yiaE CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005221 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008327 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005676 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006132 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006879 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007423 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008280 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006569 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003533 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003497 ghrB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004550 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008448 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004545 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007910 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004716 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113728 ghrB CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085599 ghrB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004402 yiaE CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0101278 ghrB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005569 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004992 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005244 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000917 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267273 hprA CDS
Person Approved Go view Shigella boydii 227 ADV-0003878 yiaE CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009394 tkrA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003403 tkrA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004916 yiaE CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075469 ghrB CDS
Person Approved Go view Shigella flexneri 301 ABT-0089813 ghrB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003754 yiaE CDS
Person Approved Go view Shigella sonnei 046 ADD-0004179 ghrB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000203 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011989 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002396 ghrB_1 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002087 ghrB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003557 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243867 ghrB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007912 tkrA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003599 ghrB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007218 tkrA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003334 CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0129063 ghrB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005782 tkrA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006385 tkrA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002991 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006192 tkrA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006664 tkrA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033896 ghrB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006676 tkrA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004476 ghrB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000020 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004945 tkrA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0008176 tkrA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0004030 ghrB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004909 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000020 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0004599 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001161 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21276mutantTn5 InsertionRequest the StrainABE-0011604ghrByiaE::Tn5KAN-I-SceI at position 392 in Plus orientation ,+ pKD460Blattner Laboratory
FB21841mutantTn5 InsertionRequest the StrainABE-0011604ghrByiaE::Tn5KAN-I-SceI at position 392 in Plus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3712310 to 3723284
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0011589yhjYCDScomplement37122363712934Upstream
ABE-0011593tagCDSforward37130923713655Upstream
ABE-0011595yiaCCDSforward37136523714092Upstream
ABE-0011597bisCCDScomplement37140613716394Upstream
ABE-0011601yiaDCDSforward37165473717206Upstream
ABE-0011604ghrBCDSforward37173103718284Matches
ABE-0011606yiaFCDScomplement37183343719044Downstream
ABE-0011612yiaGCDSforward37194783719768Downstream
ABE-0011616cspACDSforward37200493720261Downstream
ABE-0285739ysaECDSforward37204003720471Downstream
ABE-0047285hokACDScomplement37204483720600Downstream
ABE-0285256mokApseudogenecomplement37204483720632Downstream
ABE-0011618mobile_elementforward37206333722075Downstream
ABE-0011620insJCDSforward37206803721201Downstream
ABE-0011622insKCDSforward37211983722049Downstream
ABE-0285255sokAncRNAforward37220763722105Downstream
ABE-0011624glySCDScomplement37223283724397Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.