Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011624 (glyS) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011624 showshow history
Names
glyS JW3530 gly-act ECK3547 gly act b3559
Product
glycine:tRNA ligase subunit beta
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3722328 3724397 2070 690
Sequence

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001346
EnteroFam0011624: Trusted threshold=1948.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR002311 (IPR002311 (DEPRECATED) Glycyl-tRNA synthetase, class IIc, beta subunit, N-terminal) Apr 2008
Automated Process Approved IPR008909 (IPR008909 DALR anticodon binding) Apr 2008
Automated Process Approved IPR009080 (IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding) Apr 2008
Automated Process Approved IPR009007 (IPR009007 (DEPRECATED) Peptidase aspartic, catalytic) Apr 2008
Automated Process Approved IPR012338 (IPR012338 Beta-lactamase/transpeptidase-like) Apr 2008
Automated Process Approved IPR006194 (IPR006194 Glycine-tRNA synthetase, heterodimeric) Apr 2008
Automated Process Approved IPR015944 (IPR015944 Glycine-tRNA ligase, beta subunit) Jul 2018
Automated Process Approved PF02092 (PF02092 Glycyl-tRNA synthetase beta subunit) Jul 2018
Automated Process Approved PF05746 (PF05746 DALR anticodon binding domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006420 arginyl-tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008909
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006426 glycyl-tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002311
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006418 tRNA aminoacylation for protein translation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR015944
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004814 arginine-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008909
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002311
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004820 glycine-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002311
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name glyS Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym act Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ECK3547 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW3530 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym gly-act Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym gly Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved locus tag b3559 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product glycine:tRNA ligase subunit beta Published Annotation - EcoCyc Accession Number: EG10410
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Approved alternate product name glycine tRNA synthetase, beta subunit Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0011624: Trusted threshold=1948.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001346
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR009007 (DEPRECATED) Peptidase aspartic, catalytic Protein Sequence Similarity - InterPro Domain: IPR009007
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF02092 Glycyl-tRNA synthetase beta subunit Protein Sequence Similarity - PFAM Model Name: PF02092
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR002311 (DEPRECATED) Glycyl-tRNA synthetase, class IIc, beta subunit, N-terminal Protein Sequence Similarity - InterPro Domain: IPR002311
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF05746 DALR anticodon binding domain Protein Sequence Similarity - PFAM Model Name: PF05746
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR008909 DALR anticodon binding Protein Sequence Similarity - InterPro Domain: IPR008909
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding Protein Sequence Similarity - InterPro Domain: IPR009080
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR015944 Glycine-tRNA ligase, beta subunit Protein Sequence Similarity - InterPro Domain: IPR015944
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR012338 Beta-lactamase/transpeptidase-like Protein Sequence Similarity - InterPro Domain: IPR012338
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006194 Glycine-tRNA synthetase, heterodimeric Protein Sequence Similarity - InterPro Domain: IPR006194
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 6.1.1.14 Published Annotation - Swiss-Prot Accession Number: P00961 Feb 2006
Automated Process Uncurated EC number 6.1.1.19 Published Annotation - Database Name: EC2GO: GO:0004814
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 2.3.1 (information transfer; protein related; amino acid -activation) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10410 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948080 Published Annotation - Entrez Gene Database ID: 948080
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P00961 Published Annotation - Swiss-Prot Accession Number: P00961 Jan 2005
Automated Process Approved db xref ASAP:ABE-0011624 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P00961 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1789982 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Aminoacyl tRNA synthetases, tRNA modification Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006418 - tRNA aminoacylation for protein translation Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76583.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model the E-matrix Experimental - PubMed ID: 19282977
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006426 glycyl-tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002311
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006420 arginyl-tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008909
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006418 tRNA aminoacylation for protein translation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR015944
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004814 arginine-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008909
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004820 glycine-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002311
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002311
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001346 glyS CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000254 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000133 glyS CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000143 glyS CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001124 glyS CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000917 glyS CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001549 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001053 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129405 glyS CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104852 glyS CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104242 glyS CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004140 glyS CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004230 glyS CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000209 glyS CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000715 glyS CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004430 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0016141 glyS CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0004204 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000475 glyS CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0306966 glyS CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003866 glyS CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003522 glyS CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001433 glyS CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004745 glyS CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003700 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007513 glyS CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003619 glyS CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000617 glyS CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005497 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006962 glyS CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005294 glyS pseudogene
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080555 glyS CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004065 glyS CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005075 glyS CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006886 glyS CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005161 glyS CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004054 glyS CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008487 glyS CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008265 glyS CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006780 glyS CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006327 glyS CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005099 glyS CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009768 glyS CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005181 glyS CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007580 glyS CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005365 glyS CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005430 glyS CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005272 glyS CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005159 glyS CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005758 glyS CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028628 glyS CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005390 glyS CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008450 glyS CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004301 glyS CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003316 glyS CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003807 glyS CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004232 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004212 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004051 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004089 glyS CDS
Person Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0179648 glyS pseudogene
Automated Process Approved Go view Escherichia coli SE11 AFS-0003904 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003878 glyS CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134515 glyS CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002806 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004108 CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003623 glyS CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000795 glyS CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003970 glyS CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002592 glyS CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004426 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003190 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003380 glyS CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003338 glyS CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000644 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000102 glyS CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0004281 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0007834 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003535 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0286326 glyS CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007080 glyS CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060286 glyS CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000056 glyS CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001229 glyS CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000193 glyS CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009479 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0137436 glyS CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000186 glyS CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008035 glyS CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004175 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004198 glyS CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008284 glyS CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011431 glyS CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011544 glyS CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005211 glyS CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008335 glyS CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005684 glyS CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006120 glyS CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006885 glyS CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007429 glyS CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008286 glyS CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006561 glyS CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003543 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003505 glyS CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004557 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008456 glyS CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004536 glyS CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007918 glyS CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004724 glyS CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113709 glyS CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085590 glyS CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004412 glyS CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0101300 glyS CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005558 glyS CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004986 glyS CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005252 glyS CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000906 glyS CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0263548 glyS CDS
Person Approved Go view Shigella boydii 227 ADV-0003889 glyS CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009387 glyS CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003409 glyS CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004911 glyS CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075451 glyS CDS
Person Approved Go view Shigella flexneri 301 ABT-0089827 glyS CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004233 glyS CDS
Person Approved Go view Shigella sonnei 046 ADD-0004174 glyS CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0003395 glyS CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000021 VC0020 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000123 glyS CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0008069 glyS CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000211 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011965 glyS CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002387 glyS CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002096 glyS CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003548 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243854 glyS CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007905 glyS CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003606 glyS CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007225 glyS CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003340 glyS CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0129047 glyS CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005789 glyS CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006391 glyS CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002997 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006185 glyS CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006671 glyS CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033889 glyS CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006683 glyS CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004469 glyS CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000027 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004939 glyS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0008169 glyS CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0004036 glyS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004917 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000027 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0004615 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001156 glyS CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3717328 to 3729397
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0011604ghrBCDSforward37173103718284Downstream
ABE-0011606yiaFCDScomplement37183343719044Downstream
ABE-0011612yiaGCDSforward37194783719768Downstream
ABE-0011616cspACDSforward37200493720261Downstream
ABE-0285739ysaECDSforward37204003720471Downstream
ABE-0047285hokACDScomplement37204483720600Downstream
ABE-0285256mokApseudogenecomplement37204483720632Downstream
ABE-0011618mobile_elementforward37206333722075Downstream
ABE-0011620insJCDSforward37206803721201Downstream
ABE-0011622insKCDSforward37211983722049Downstream
ABE-0285255sokAncRNAforward37220763722105Downstream
ABE-0011624glySCDScomplement37223283724397Matches
ABE-0011626glyQCDScomplement37244073725318Upstream
ABE-0285074ysaBCDScomplement37254133725712Upstream
ABE-0011630wecHCDSforward37258873726882Upstream
ABE-0011632yiaACDScomplement37269243727361Upstream
ABE-0011634yiaBCDScomplement37274073727748Upstream
ABE-0011637xylBCDScomplement37279173729371Upstream
ABE-0285848xylZncRNAcomplement37293863729545Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.