Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011626 (glyQ) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011626 showshow history
Names
glyQ cfcA JW3531 ECK3548 glyS b3560
Product
glycine:tRNA ligase subunit alpha
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3724407 3725318 912 304
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001347
EnteroFam0011626: Trusted threshold=964; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR006194 (IPR006194 Glycine-tRNA synthetase, heterodimeric) Apr 2008
Automated Process Approved IPR002310 (IPR002310 Glycine-tRNA ligase, alpha subunit) Apr 2008
Automated Process Approved PF02091 (PF02091 Glycyl-tRNA synthetase alpha subunit) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006426 glycyl-tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006194
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006418 tRNA aminoacylation for protein translation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002310
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004820 glycine-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006194
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006194
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name glyQ Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK3548 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym cfcA Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW3531 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym glyS Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved locus tag b3560 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product glycine:tRNA ligase subunit alpha Published Annotation - EcoCyc Accession Number: EG10409
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Approved alternate product name glycine tRNA synthetase, alpha subunit Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0011626: Trusted threshold=964; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001347
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR002310 Glycine-tRNA ligase, alpha subunit Protein Sequence Similarity - InterPro Domain: IPR002310
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF02091 Glycyl-tRNA synthetase alpha subunit Protein Sequence Similarity - PFAM Model Name: PF02091
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006194 Glycine-tRNA synthetase, heterodimeric Protein Sequence Similarity - InterPro Domain: IPR006194
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 6.1.1.14 Published Annotation - Swiss-Prot Accession Number: P00960 Feb 2006
Person Uncurated MultiFun 2.3.1 (information transfer; protein related; amino acid -activation) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10409 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1789983 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0011626 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P00960 Published Annotation - Swiss-Prot Accession Number: P00960 Jan 2005
Automated Process Approved db xref GeneID:948079 Published Annotation - Entrez Gene Database ID: 948079
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P00960 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Aminoacyl tRNA synthetases, tRNA modification Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006418 - tRNA aminoacylation for protein translation Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76584.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.97
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model the E-matrix Experimental - PubMed ID: 19282977
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0006418 tRNA aminoacylation for protein translation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006426 glycyl-tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006194
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006194
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002310
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004820 glycine-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006194
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001347 glyQ CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000253 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000189 glyQ CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000175 glyQ CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000425 glyQ CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000702 glyQ CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001550 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001052 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129406 glyQ CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104853 glyQ CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104243 glyQ CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004141 glyQ CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004229 glyQ CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000208 glyQ CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000714 glyQ CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004429 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0016143 glyQ CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0004205 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000474 glyQ CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0306963 glyQ CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003865 glyQ CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003521 glyQ CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001434 glyQ CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004744 glyQ CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003701 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007512 glyQ CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003620 glyQ CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000616 glyQ CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005496 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006963 glyQ CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005293 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080556 glyQ CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004066 glyQ CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005074 glyQ CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006887 glyQ CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005160 glyQ CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004055 glyQ CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008488 glyQ CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004884 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008266 glyQ CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006781 glyQ CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006328 glyQ CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005098 glyQ CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009769 glyQ CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005180 glyQ CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007581 glyQ CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005366 glyQ CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005431 glyQ CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005273 glyQ CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005160 glyQ CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005759 glyQ CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028629 glyQ CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005389 glyQ CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008451 glyQ CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004300 CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003806 glyQ CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004231 glyQ CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004213 glyQ CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004050 glyQ CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004090 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178235 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003905 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003879 glyQ CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134516 glyQ CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002807 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004109 glyQ CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003624 glyQ CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000796 glyQ CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003971 glyQ CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002591 glyQ CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004425 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003189 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003379 glyQ CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003337 glyQ CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000645 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000101 glyQ CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0004282 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0007833 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003534 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0286325 glyQ CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007079 glyQ CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060285 glyQ CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000049 glyQ CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001228 glyQ CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000192 glyQ CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009480 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0137433 glyQ CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000185 glyQ CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008036 glyQ CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004173 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004199 glyQ CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008285 glyQ CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011434 glyQ CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011541 glyQ CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005210 glyQ CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008336 glyQ CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005685 glyQ CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006119 glyQ CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006886 glyQ CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007430 glyQ CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008287 glyQ CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006560 glyQ CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003544 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003506 glyQ CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004558 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008457 glyQ CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004535 glyQ CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007919 glyQ CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004725 glyQ CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113705 glyQ CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085589 glyQ CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004413 glyQ CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0101303 glyQ CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005557 glyQ CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004985 glyQ CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005253 glyQ CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000907 glyQ CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0263549 glyQ CDS
Person Approved Go view Shigella boydii 227 ADV-0003890 glyQ CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009386 glyQ CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003410 glyQ CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004910 glyQ CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075450 glyQ CDS
Person Approved Go view Shigella flexneri 301 ABT-0089828 glyQ CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004232 glyQ CDS
Person Approved Go view Shigella sonnei 046 ADD-0004173 glyQ CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0003396 glyQ CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000022 VC0021 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000122 glyQ CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0008071 glyQ CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000210 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011967 glyQ CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002388 glyQ CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002095 glyQ CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003549 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243855 glyQ CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007906 glyQ CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003605 glyQ CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007224 glyQ CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003339 glyQ CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0129049 glyQ CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005788 glyQ CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006390 glyQ CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002996 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006186 glyQ CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006670 glyQ CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033890 glyQ CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006682 glyQ CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004470 glyQ CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000026 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004940 glyQ CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0008170 glyQ CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0004035 glyQ CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004916 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000026 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0004618 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001155 glyQ CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21285mutantTn5 InsertionRequest the StrainABE-0011626glyQglyQ::Tn5KAN-I-SceI at position 254 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3719407 to 3730318
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0011612yiaGCDSforward37194783719768Downstream
ABE-0011616cspACDSforward37200493720261Downstream
ABE-0285739ysaECDSforward37204003720471Downstream
ABE-0047285hokACDScomplement37204483720600Downstream
ABE-0285256mokApseudogenecomplement37204483720632Downstream
ABE-0011618mobile_elementforward37206333722075Downstream
ABE-0011620insJCDSforward37206803721201Downstream
ABE-0011622insKCDSforward37211983722049Downstream
ABE-0285255sokAncRNAforward37220763722105Downstream
ABE-0011624glySCDScomplement37223283724397Downstream
ABE-0011626glyQCDScomplement37244073725318Matches
ABE-0285074ysaBCDScomplement37254133725712Upstream
ABE-0011630wecHCDSforward37258873726882Upstream
ABE-0011632yiaACDScomplement37269243727361Upstream
ABE-0011634yiaBCDScomplement37274073727748Upstream
ABE-0011637xylBCDScomplement37279173729371Upstream
ABE-0285848xylZncRNAcomplement37293863729545Upstream
ABE-0011639xylACDScomplement37294433730765Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.