Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011637 (xylB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011637 showshow history
Names
xylB JW3536 ECK3553 b3564
Product
xylulokinase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3727917 3729371 1455 485
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001348
EnteroFam0011637: Trusted threshold=1279.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR000577 (IPR000577 Carbohydrate kinase, FGGY) Apr 2008
Automated Process Approved IPR006000 (IPR006000 Xylulokinase) Apr 2008
Automated Process Approved IPR018484 (IPR018484 Carbohydrate kinase, FGGY, N-terminal) Jul 2018
Automated Process Approved IPR018485 (IPR018485 Carbohydrate kinase, FGGY, C-terminal) Jul 2018
Automated Process Approved PF00370 (PF00370 FGGY family of carbohydrate kinases, N-terminal domain) Jul 2018
Automated Process Approved PF02782 (PF02782 FGGY family of carbohydrate kinases, C-terminal domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0005997 xylulose metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006000
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000577
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0016773 phosphotransferase activity, alcohol group as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR018484, IPR018485
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004856 xylulokinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006000
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Uncurated name xylB Published Sequence Analysis - PubMed ID: 6330500
Reference: Escherichia coli K-12 MG1655 		May 2007
Person Approved synonym JW3536 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK3553 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3564 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product xylulokinase Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0011637: Trusted threshold=1279.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001348
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR006000 Xylulokinase Protein Sequence Similarity - InterPro Domain: IPR006000
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000577 Carbohydrate kinase, FGGY Protein Sequence Similarity - InterPro Domain: IPR000577
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00370 FGGY family of carbohydrate kinases, N-terminal domain Protein Sequence Similarity - PFAM Model Name: PF00370
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR018484 Carbohydrate kinase, FGGY, N-terminal Protein Sequence Similarity - InterPro Domain: IPR018484
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF02782 FGGY family of carbohydrate kinases, C-terminal domain Protein Sequence Similarity - PFAM Model Name: PF02782
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR018485 Carbohydrate kinase, FGGY, C-terminal Protein Sequence Similarity - InterPro Domain: IPR018485
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 2.7.1.17 Published Annotation - Swiss-Prot Accession Number: P09099 Feb 2006
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0011637 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948133 Published Annotation - Entrez Gene Database ID: 948133
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1789987 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P09099 Published Annotation - Swiss-Prot Accession Number: P09099 Jan 2005
Automated Process Approved db xref EcoGene:EG11075 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P09099 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Degradation of small molecules: Carbon compounds Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76588.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000577
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0005997 xylulose metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006000
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0016773 phosphotransferase activity, alcohol group as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR018484, IPR018485
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004856 xylulokinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006000
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001348 xylB CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001780 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001341 xylB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000751 xylB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000072 xylB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000139 xylB CDS
Ortholog
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001071 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004212 xylB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004224 xylB CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000204 xylB_1 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000710 xylB_2 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004450 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0016106 xylB CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0004179 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000469 xylB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004739 xylB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003706 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007507 xylB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003625 xylB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000611 xylB CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005489 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006968 xylB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005288 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080561 xylB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004073 xylB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006892 xylB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005155 xylB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004060 xylB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008493 xylB CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008271 xylB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006786 xylB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006333 xylB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005093 xylB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009774 xylB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005175 xylB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007586 xylB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005371 xylB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005436 xylB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005278 xylB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005165 xylB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005764 xylB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028634 xylB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005384 xylB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008456 xylB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004295 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003320 xylB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003801 xylB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004226 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004218 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004045 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004095 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178240 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003910 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003884 xylB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134520 xylB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002812 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004114 xylB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001113 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000690 xylB CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003976 xylB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002587 xylB CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004445 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003142 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003331 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003278 xylB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000714 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000039 xylB CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000053 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0007821 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003481 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287091 CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007031 xylB CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060297 xylB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000067 xylB CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000029 xylB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000205 xylB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009466 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0002749 xylB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008041 xylB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004169 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004203 xylB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008290 xylB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011447 xylB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011527 xylB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005205 xylB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008341 xylB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005690 xylB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006115 xylB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006890 xylB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007434 xylB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008293 xylB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006554 xylB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003548 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003510 xylB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004565 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008463 xylB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004529 xylB CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113695 xylB CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085585 xylB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004419 xylB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0101315 xylB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005551 xylB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004980 xylB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005257 xylB CDS
Person Approved Go view Shigella boydii 227 ADV-0003899 xylB pseudogene
Person Approved Go view Shigella flexneri 2457T ABQ-0075446 xylB CDS
Person Approved Go view Shigella flexneri 301 ABT-0089833 xylB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004227 xylB CDS
Person Approved Go view Shigella sonnei 046 ADD-0004163 xylB pseudogene
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0003399 xylB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000167 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011890 xylB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002364 xylB_1 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002640 xylB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000685 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242487 xylB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008289 xylB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004922 xylB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007260 xylB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003362 xylB CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128941 xylB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005824 xylB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007197 xylB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003744 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006151 xylB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006936 xylB CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033857 xylB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006717 xylB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004429 xylB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004542 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007870 xylB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0008142 xylB CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0004012 xylB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004885 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000068 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0004629 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001152 xylB CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21286mutantTn5 InsertionRequest the StrainABE-0011637xylBxylB::Tn5KAN-I-SceI at position 127 in Minus orientation ,- pKD465Blattner Laboratory
FB21287mutantTn5 InsertionRequest the StrainABE-0011637xylBxylB::Tn5KAN-I-SceI at position 127 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3722917 to 3734371
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0011624glySCDScomplement37223283724397Downstream
ABE-0011626glyQCDScomplement37244073725318Downstream
ABE-0285074ysaBCDScomplement37254133725712Downstream
ABE-0011630wecHCDSforward37258873726882Downstream
ABE-0011632yiaACDScomplement37269243727361Downstream
ABE-0011634yiaBCDScomplement37274073727748Downstream
ABE-0011637xylBCDScomplement37279173729371Matches
ABE-0285848xylZncRNAcomplement37293863729545Upstream
ABE-0011639xylACDScomplement37294433730765Upstream
ABE-0011646xylFCDSforward37311313732123Upstream
ABE-0011648xylGCDSforward37322013733742Upstream
ABE-0011650xylHCDSforward37337203734901Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.