Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011639 (xylA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011639 showshow history
Names
xylA JW3537 ECK3554 b3565
Product
D-xylose isomerase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3729443 3730765 1323 441
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001349
EnteroFam0011639: Trusted threshold=1284.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR001998 (IPR001998 Xylose isomerase) Apr 2008
Automated Process Approved IPR012307 (IPR012307 (DEPRECATED) Xylose isomerase, TIM barrel domain) Apr 2008
Automated Process Approved IPR013452 (IPR013452 Xylose isomerase, bacterial-type) Apr 2008
Automated Process Approved IPR036237 (IPR036237 Xylose isomerase-like superfamily) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001998
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006006 glucose metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0009045 xylose isomerase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001998
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name xylA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW3537 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK3554 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3565 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product D-xylose isomerase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name D-xylose isomerase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0011639: Trusted threshold=1284.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001349
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR012307 (DEPRECATED) Xylose isomerase, TIM barrel domain Protein Sequence Similarity - InterPro Domain: IPR012307
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036237 Xylose isomerase-like superfamily Protein Sequence Similarity - InterPro Domain: IPR036237
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001998 Xylose isomerase Protein Sequence Similarity - InterPro Domain: IPR001998
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013452 Xylose isomerase, bacterial-type Protein Sequence Similarity - InterPro Domain: IPR013452
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 5.3.1.5 Published Annotation - Swiss-Prot Accession Number: P00944 Feb 2006
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.9 (metabolism; central intermediary metabolism; glucose metabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948141 Published Annotation - Entrez Gene Database ID: 948141
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P00944 Published Annotation - Swiss-Prot Accession Number: P00944 Jan 2005
Automated Process Approved db xref GI:1789988 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P00944 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0011639 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11074 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Degradation of small molecules: Carbon compounds Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0016052 - carbohydrate catabolic process; GO_process: GO:0006006 - glucose metabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76589.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated regulation expression regulated by dsrA; expression is increased in strain overexpressing dsrA Experimental - PubMed ID: 15342588
Reference: Escherichia coli K-12 M182 		Oct 2005
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.26
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0006006 glucose metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001998
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0009045 xylose isomerase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001998
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001349 xylA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001781 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002065 xylA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002085 xylA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0003681 xylA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002094 xylA CDS
Ortholog
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001072 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004211 xylA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004223 xylA CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000203 xylA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000709 xylA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004451 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0016103 xylA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0004178 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000468 xylA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004738 xylA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003707 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007506 xylA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003626 xylA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000610 xylA CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005488 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006969 xylA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005287 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080562 xylA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004074 xylA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005067 xylA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006893 xylA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005154 xylA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004061 xylA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008494 xylA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004890 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008272 xylA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006787 xylA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006334 xylA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005092 xylA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009775 xylA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005174 xylA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007587 xylA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005372 xylA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005437 xylA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005279 xylA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005166 xylA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005765 xylA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028635 xylA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005383 xylA_2 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008457 xylA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004294 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003321 xylA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003800 xylA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004225 xylA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004219 xylA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004044 xylA CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004096 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178241 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003911 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003885 xylA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134521 xylA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002813 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004115 xylA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000691 xylA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002586 xylA CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004446 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003143 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003332 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003279 xylA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000713 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000040 xylA CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000052 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0007820 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003482 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287092 xylA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007032 xylA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060298 xylA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0004165 xylA CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000030 xylA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000206 xylA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009465 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0142048 xylA CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0003051 xylA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008042 xylA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004168 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004204 xylA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008291 xylA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011453 xylA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011523 xylA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005204 xylA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008342 xylA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005691 xylA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006114 xylA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006891 xylA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007435 xylA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008294 xylA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006553 xylA CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003511 xylA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004566 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008464 xylA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004528 xylA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007925 xylA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004731 xylA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113690 xylA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085584 xylA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004420 xylA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0101318 xylA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005550 xylA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004979 xylA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005258 xylA CDS
Person Approved Go view Shigella boydii 227 ADV-0003900 xylA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009380 xylA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003169 xylA CDS
Person Uncurated Go view Shigella flexneri 2457T ABQ-0075445 xylA pseudogene
Person Approved Go view Shigella flexneri 301 ABT-0089834 xylA pseudogene
Person Approved Go view Shigella sonnei 046 ADD-0004162 xylA CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0003400 xylA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000166 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011886 xylA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002363 xylA_1 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002641 xylA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000686 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242485 xylA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008288 xylA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004921 xylA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007261 xylA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003363 xylA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128937 xylA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005825 xylA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007198 xylA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003745 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006150 xylA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006935 xylA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033856 xylA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006718 xylA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004428 xylA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004541 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007869 xylA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0008141 xylA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0004011 xylA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004884 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000069 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0004639 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001151 xylA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21288mutantTn5 InsertionRequest the StrainABE-0011639xylAxylA::Tn5KAN-I-SceI at position 1064 in Plus orientation ,- pKD465Blattner Laboratory
FB21289mutantTn5 InsertionRequest the StrainABE-0011639xylAxylA::Tn5KAN-I-SceI at position 1064 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3724443 to 3735765
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0011626glyQCDScomplement37244073725318Downstream
ABE-0285074ysaBCDScomplement37254133725712Downstream
ABE-0011630wecHCDSforward37258873726882Downstream
ABE-0011632yiaACDScomplement37269243727361Downstream
ABE-0011634yiaBCDScomplement37274073727748Downstream
ABE-0011637xylBCDScomplement37279173729371Downstream
ABE-0285848xylZncRNAcomplement37293863729545Overlaps Downstream
ABE-0011639xylACDScomplement37294433730765Matches
ABE-0011646xylFCDSforward37311313732123Upstream
ABE-0011648xylGCDSforward37322013733742Upstream
ABE-0011650xylHCDSforward37337203734901Upstream
ABE-0011652xylRCDSforward37349793736157Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.