Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011648 (xylG) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011648 showshow history
Names
xylG JW3539 ECK3556 b3567
Product
ATP-binding component of an ABC superfamily xylose transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3732201 3733742 1542 514
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003439 (IPR003439 ABC transporter-like) Apr 2008
Automated Process Approved IPR013455 (IPR013455 ABC transporter, D-xylose, ATP-binding protein) Apr 2008
Automated Process Approved IPR003593 (IPR003593 AAA+ ATPase domain) Apr 2008
Automated Process Approved IPR027417 (IPR027417 P-loop containing nucleoside triphosphate hydrolase) Jul 2018
Automated Process Approved PF00005 (PF00005 ABC transporter) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0015753 D-xylose transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR013455
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR013455
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0015614 ABC-type D-xylose transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR013455
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name xylG Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW3539 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK3556 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3567 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product ATP-binding component of an ABC superfamily xylose transporter Published Annotation - EcoCyc Accession Number: EG12275
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Approved alternate product name putative ATP-binding protein of xylose transport system Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name D-xylose transport protein (ABC superfamily, atp_bind) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name fused D-xylose transporter subunits of ABC superfamily: ATP-binding components Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Automated Process Approved protein family IPR027417 P-loop containing nucleoside triphosphate hydrolase Protein Sequence Similarity - InterPro Domain: IPR027417
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00005 ABC transporter Protein Sequence Similarity - PFAM Model Name: PF00005
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR003593 AAA+ ATPase domain Protein Sequence Similarity - InterPro Domain: IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013455 ABC transporter, D-xylose, ATP-binding protein Protein Sequence Similarity - InterPro Domain: IPR013455
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR003439 ABC transporter-like Protein Sequence Similarity - InterPro Domain: IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated EC number 7.5.2.10 Published Annotation - Swiss-Prot Accession Number: P37388
Reference: Escherichia coli K-12 		Dec 2019
Automated Process Uncurated EC number 3.6.1.3 Published Annotation - Database Name: EC2GO: GO:0016887
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.A.1.a (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily ATP binding cytoplasmic component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.50 (transport; substrate; D-xylose) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P37388 Published Annotation - Swiss-Prot Accession Number: P37388 Jan 2005
Automated Process Approved db xref GI:1789991 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948127 Published Annotation - Entrez Gene Database ID: 948127
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P37388 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0011648 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12275 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved function transport; Sugar metabolism Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note putative ATP-binding protein of xylose transport system; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76591.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 7.88
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0015753 D-xylose transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR013455
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR013455
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0015614 ABC-type D-xylose transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR013455
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002085 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002617 xylG CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002565 xylG CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0003734 xylG CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002753 xylG CDS
Ortholog
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001074 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004209 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004221 xylG CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000201 xylG CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004454 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0016100 xylG CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0004176 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000466 xylG CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004736 xylG CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003709 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007504 xylG CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003628 xylG CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000608 xylG CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005485 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006971 xylG CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005285 CDS
Person Uncurated Go view Escherichia coli BL21(DE3) AHL-0005429 pseudogene
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080564 xylG CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004076 xylG CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005065 xylG CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006895 xylG CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005152 xylG CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004063 xylG CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008496 xylG CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004892 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008274 xylG CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006789 xylG CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006336 xylG CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005090 xylG CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009777 xylG CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005172 xylG CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007589 xylG CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005374 xylG CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005439 xylG CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005281 xylG CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005168 xylG CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005767 xylG CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028637 xylG CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005381 xylG CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008459 xylG CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004292 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003323 xylG CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003798 xylG CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004223 xylG CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004221 xylG CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004042 xylG CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004098 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178243 araG CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003914 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003887 xylG CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134523 xylG CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002815 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004117 xylG CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003979 xylG CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002584 xylG CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004449 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003145 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003334 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003281 xylG CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000711 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000042 xylG CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000050 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0007818 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003484 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287097 xylG CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007034 xylG CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060300 xylG CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000080 xylG CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001237 xylG CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000208 xylG CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009462 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0003053 xylG CDS
Person Approved Go view Shigella boydii 227 ADV-0003902 xylG CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009376 xylG CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003166 xylG CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075443 xylG CDS
Person Approved Go view Shigella flexneri 301 ABT-0089835 xylG CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004224 xylG CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0003403 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000164 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011878 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002361 xylG CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002643 xylG CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000688 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242483 mglA7 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004918 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007263 xylG CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003365 CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128930 CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005828 xylG CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007200 xylG CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006148 xylG CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006933 xylG CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033854 xylG CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006720 xylG CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004425 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004538 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007867 xylG CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0008139 xylG CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0004009 xylG CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004881 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000072 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0004645 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001149 xylG CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21292mutantTn5 InsertionRequest the StrainABE-0011648xylGxylG::Tn5KAN-I-SceI at position 878 in Minus orientation ,- pKD465Blattner Laboratory
FB23525mutantTn5 InsertionRequest the StrainABE-0011648xylGxylG::Tn5KAN-I-SceI at position 878 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3727201 to 3738742
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0011632yiaACDScomplement37269243727361Upstream
ABE-0011634yiaBCDScomplement37274073727748Upstream
ABE-0011637xylBCDScomplement37279173729371Upstream
ABE-0285848xylZncRNAcomplement37293863729545Upstream
ABE-0011639xylACDScomplement37294433730765Upstream
ABE-0011646xylFCDSforward37311313732123Upstream
ABE-0011648xylGCDSforward37322013733742Matches
ABE-0011650xylHCDSforward37337203734901Overlaps Downstream
ABE-0011652xylRCDSforward37349793736157Downstream
ABE-0285620repeat_regionforward37361543736324Downstream
ABE-0011655baxCDScomplement37363533737177Downstream
ABE-0285772baxLCDScomplement37371773737203Downstream
ABE-0011668malSCDSforward37374973739527Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.