Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011671 (avtA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011671 showshow history
Names
avtA JW5652 ECK3561 b3572
Product
valine-pyruvate aminotransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3739705 3740958 1254 418
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001351
EnteroFam0011671: Trusted threshold=1179.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR015424 (IPR015424 Pyridoxal phosphate-dependent transferase) Apr 2008
Automated Process Approved IPR004839 (IPR004839 Aminotransferase, class I/classII) Apr 2008
Automated Process Approved IPR015422 (IPR015422 Pyridoxal phosphate-dependent transferase, small domain) Apr 2008
Automated Process Approved IPR015421 (IPR015421 Pyridoxal phosphate-dependent transferase, major domain) Apr 2008
Automated Process Approved PF00155 (PF00155 Aminotransferase class I and II) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004839
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006523 alanine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015422
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004839
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016769 transferase activity, transferring nitrogenous groups GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004839
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name avtA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK3561 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW5652 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3572 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product valine-pyruvate aminotransferase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name alanine-alpha-ketoisovalerate (or valine-pyruvate) transaminase, transaminase C Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name valine-pyruvate aminotransferase Published Annotation - Database Name: GenProtEC Jan 2006
Automated Process Approved alternate product name valine-pyruvate aminotransferase 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Person Approved EnteroFam EnteroFam0011671: Trusted threshold=1179.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001351
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR004839 Aminotransferase, class I/classII Protein Sequence Similarity - InterPro Domain: IPR004839
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR015422 Pyridoxal phosphate-dependent transferase, small domain Protein Sequence Similarity - InterPro Domain: IPR015422
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR015424 Pyridoxal phosphate-dependent transferase Protein Sequence Similarity - InterPro Domain: IPR015424
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR015421 Pyridoxal phosphate-dependent transferase, major domain Protein Sequence Similarity - InterPro Domain: IPR015421
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00155 Aminotransferase class I and II Protein Sequence Similarity - PFAM Model Name: PF00155
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 2.6.1.66 Published Annotation - Swiss-Prot Accession Number: P09053 Feb 2006
Person Uncurated MultiFun 1.5.1.17 (metabolism; building block biosynthesis; amino acids; alanine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P09053 Published Annotation - Swiss-Prot Accession Number: P09053 Jan 2005
Automated Process Approved db xref GeneID:948087 Published Annotation - Entrez Gene Database ID: 948087
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:48994949 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P09053 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0011671 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10107 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Amino acid biosynthesis: Alanine Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note alanine-alpha-ketoisovalerate (or valine-pyruvate) transaminase, transaminase C; GO_process: GO:0006523 - alanine biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAT48193.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved sequence correction version m56: G208 to A Experimental - GenBank Accession Number: AG613299
Reference: Escherichia coli 		May 2004
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004839
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006523 alanine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004839
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015422
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016769 transferase activity, transferring nitrogenous groups GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004839
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001351 avtA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000250 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001177 avtA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001072 avtA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001361 avtA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001609 avtA CDS
Ortholog
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001040 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004204 avtA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004215 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000196 avtA CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0000705 avtA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004421 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0016155 avtA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0004212 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000461 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0307064 avtA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003900 avtA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003552 avtA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001440 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004731 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003715 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007499 avtA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003633 avtA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000603 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005478 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006977 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005280 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080570 avtA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004081 avtA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005060 avtA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006901 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005146 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004068 avtA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008501 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004898 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008279 avtA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006794 avtA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006341 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005084 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009782 avtA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005167 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007594 avtA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005379 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005444 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005286 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005173 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005772 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028642 avtA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005376 avtA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008464 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004287 avtA CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003328 avtA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003793 avtA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004218 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004226 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004037 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004104 avtA CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178250 avtA CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003920 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003892 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134528 avtA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002821 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004123 avtA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003636 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000788 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003984 avtA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002579 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004413 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003161 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003350 avtA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000669 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000079 avtA CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000013 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0007790 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003500 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0286303 avtA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007051 avtA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064724 avtA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002583 avtA CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001192 avtA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000766 avtA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0004492 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0137431 avtA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008046 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004163 CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008296 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011466 avtA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011513 avtA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005199 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008346 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005695 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006107 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006896 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007441 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008298 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006547 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003553 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003515 avtA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004574 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008470 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004522 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007931 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004737 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113680 avtA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085580 avtA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004427 avtA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0101335 avtA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005546 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004972 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005264 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000920 CDS
Person Approved Go view Shigella boydii 227 ADV-0003907 avtA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009371 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003156 CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004193 avtA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075437 avtA CDS
Person Approved Go view Shigella flexneri 301 ABT-0089839 avtA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004219 avtA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000020 VC0019 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0008076 avtA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000201 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011997 avtA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002398 avtA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002085 avtA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003559 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243874 avtA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007915 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003595 avtA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007215 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003331 avtA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0129074 avtA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005779 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006382 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002989 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006195 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006661 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033899 avtA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006673 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004480 avtA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000017 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004948 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0008179 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0004027 avtA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004905 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000016 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0004674 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001144 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21300mutantTn5 InsertionRequest the StrainABE-0011671avtAavtA::Tn5KAN-I-SceI at position 901 in Minus orientation ,- pKD465Blattner Laboratory
FB21301mutantTn5 InsertionRequest the StrainABE-0011671avtAavtA::Tn5KAN-I-SceI at position 901 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3734705 to 3745958
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0011650xylHCDSforward37337203734901Upstream
ABE-0011652xylRCDSforward37349793736157Upstream
ABE-0285620repeat_regionforward37361543736324Upstream
ABE-0011655baxCDScomplement37363533737177Upstream
ABE-0285772baxLCDScomplement37371773737203Upstream
ABE-0011668malSCDSforward37374973739527Upstream
ABE-0011671avtACDSforward37397053740958Matches
ABE-0285621repeat_regionforward37409643741061Downstream
ABE-0011674ysaACDScomplement37411093741582Downstream
ABE-0011677plaRCDScomplement37416843742532Downstream
ABE-0011682yiaKCDSforward37427333743731Downstream
ABE-0011684yiaLCDSforward37437433744210Downstream
ABE-0011690yiaMCDSforward37443283744801Downstream
ABE-0011692yiaNCDSforward37448043746081Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.