Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011692 (yiaN) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011692 showshow history
Names
yiaN JW5651 ECK3567 b3578
Product
membrane subunit of 2,3-diketo-L-gulonate:Na+ symporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3744804 3746081 1278 426
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004681 (IPR004681 TRAP transporter large membrane protein DctM) Apr 2008
Automated Process Approved IPR010656 (IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit) Apr 2008
Automated Process Approved PF06808 (PF06808 Tripartite ATP-independent periplasmic transporter, DctM component) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004681
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name yiaN Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK3567 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW5651 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3578 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product membrane subunit of 2,3-diketo-L-gulonate:Na+ symporter Published Annotation - EcoCyc Accession Number: EG12282
Reference: Escherichia coli K-12 MG1655 		Jan 2021
Person Uncurated alternate product name putative component of transport system Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name putative membrane protein Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Approved alternate product name predicted transporter Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved alternate product name L-dehydroascorbate transporter, TRAP permease large subunit for TRAP (TRipartite ATP-independent Periplasmic) family transporter YiaMNO Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Automated Process Approved protein family PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Protein Sequence Similarity - PFAM Model Name: PF06808
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR004681 TRAP transporter large membrane protein DctM Protein Sequence Similarity - InterPro Domain: IPR004681
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit Protein Sequence Similarity - InterPro Domain: IPR010656
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P37675 Published Annotation - Swiss-Prot Accession Number: P37675 Jan 2005
Automated Process Approved db xref GeneID:948092 Published Annotation - Entrez Gene Database ID: 948092
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:48994950 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P37675 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12282 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0011692 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function putative membrane; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note putative membrane protein; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAT48194.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved sequence correction version m56: frameshift error corrected, altering C-term. Experimental - GenBank Accession Number: AG613300
Reference: Escherichia coli 		May 2004
Automated Process Approved subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004681
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002638 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003672 yiaN CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0004308 yiaN CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0004301 yiaN CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0003747 yiaN CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001448 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004725 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003722 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007493 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003639 CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000596 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005471 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006983 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005274 DctM CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080577 yiaN CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004087 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005054 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006907 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005140 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004075 yiaN CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008507 CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005369 siaM CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008471 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004279 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003334 yiaN CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003787 yiaN CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004212 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004232 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004031 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004111 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178257 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003926 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003898 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004130 yiaN CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060573 CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000233 CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000122 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001919 CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0004855 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001076 dctM CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008053 CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008304 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011483 yiaN CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011494 yiaN CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005192 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008353 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005702 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006100 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006903 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007448 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008305 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006540 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003560 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003522 yiaN CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004582 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008477 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004515 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007938 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004744 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113661 yiaN CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0085573 yiaN CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004435 yiaN CDS
Person Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0101356 yiaN CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005539 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004965 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005271 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266759 dctM CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009365 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003150 CDS
Person Uncurated Go view Shigella flexneri 2457T ABQ-0075427 CDS
Person Uncurated Go view Shigella flexneri 301 ABT-0256134 CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004211 yiaN CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001851 VC1777 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0007612 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003618 siaT CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002999 siaT CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237773 CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005801 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001062 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005712 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001859 CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0120551 CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008266 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004336 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000779 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009639 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0008527 CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032317 CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007720 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002888 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001673 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006532 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006382 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001677 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002041 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002961 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3739804 to 3751081
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0011671avtACDSforward37397053740958Upstream
ABE-0285621repeat_regionforward37409643741061Upstream
ABE-0011674ysaACDScomplement37411093741582Upstream
ABE-0011677plaRCDScomplement37416843742532Upstream
ABE-0011682yiaKCDSforward37427333743731Upstream
ABE-0011684yiaLCDSforward37437433744210Upstream
ABE-0011690yiaMCDSforward37443283744801Upstream
ABE-0011692yiaNCDSforward37448043746081Matches
ABE-0011694yiaOCDSforward37460943747080Downstream
ABE-0011696lyxKCDSforward37470843748580Downstream
ABE-0011698sgbHCDSforward37485773749239Downstream
ABE-0011700sgbUCDSforward37492323750092Downstream
ABE-0011702sgbECDSforward37500863750781Downstream
ABE-0285168ysaCpseudogenecomplement37508133750916Downstream
ABE-0285169ysaDpseudogeneforward37509173751094Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.