Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011698 (sgbH) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011698 showshow history
Names
sgbH yiaQ JW3553 ECK3570 sgbH b3581
Product
3-keto-L-gulonate 6-phosphate decarboxylase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3748577 3749239 663 221
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR013785 (IPR013785 Aldolase-type TIM barrel) Apr 2008
Automated Process Approved IPR011060 (IPR011060 Ribulose-phosphate binding barrel) Apr 2008
Automated Process Approved IPR001754 (IPR001754 Orotidine 5'-phosphate decarboxylase domain) Apr 2008
Automated Process Approved PF00215 (PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001754
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004590 orotidine-5'-phosphate decarboxylase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001754
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name sgbH Published Sequence Analysis - PubMed ID: 11741871
Reference: Escherichia coli K-12 MG1655 		Jun 2020
Person Approved synonym sgbH Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym yiaQ Published Annotation - PubMed ID: 10913096
Reference: Escherichia coli K-12 		Mar 2009
Person Approved synonym ECK3570 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW3553 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3581 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product 3-keto-L-gulonate 6-phosphate decarboxylase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name 3-keto-L-gulonate 6-phosphate decarboxylase Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name probable 3-hexulose 6-phosphate synthase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family IPR011060 Ribulose-phosphate binding barrel Protein Sequence Similarity - InterPro Domain: IPR011060
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013785 Aldolase-type TIM barrel Protein Sequence Similarity - InterPro Domain: IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family Protein Sequence Similarity - PFAM Model Name: PF00215
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001754 Orotidine 5'-phosphate decarboxylase domain Protein Sequence Similarity - InterPro Domain: IPR001754
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 4.1.2.- Published Annotation - Swiss-Prot Accession Number: P37678 Feb 2006
Automated Process Uncurated EC number 4.1.1.23 Published Annotation - Database Name: EC2GO: GO:0004590
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 1.7.1 (metabolism; central intermediary metabolism; unassigned reversible reactions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12285 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1790006 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P37678 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P37678 Published Annotation - Swiss-Prot Accession Number: P37678 Jan 2005
Automated Process Approved db xref ASAP:ABE-0011698 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948098 Published Annotation - Entrez Gene Database ID: 948098
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved function putative enzyme; Central intermediary metabolism: Pool, multipurpose conversions Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note probable 3-hexulose 6-phosphate synthase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76605.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Approved subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Approved subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001754
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004590 orotidine-5'-phosphate decarboxylase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001754
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002609 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003444 yiaQ CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003413 yiaQ CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0003256 yiaQ CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0003413 sgbH CDS
Ortholog
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000697 sgbH CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004727 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000453 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004722 sgbH CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003725 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007489 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003642 sgbH CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000593 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005467 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006987 sgbH CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005271 SgbH CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080581 sgbH CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004090 sgbH CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005051 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006910 sgbH CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005137 sgbH CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004078 sgbH CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008510 sgbH CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005366 ulaD_1 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008474 sgbH CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004276 sgbH CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003337 sgbH CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003784 sgbH CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004209 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004235 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004028 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004115 sgbH CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178260 sgbH CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003929 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003901 sgbH CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004134 sgbH CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000224 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004484 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003608 sgbH CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000366 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000382 sgbH CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0004004 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009637 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288973 yiaQ CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002303 CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008913 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008056 sgbH CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004209 sgbH CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008307 sgbH CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011493 sgbH CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011486 sgbH CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005189 sgbH CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008356 sgbH CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005705 sgbH CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006097 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006906 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007451 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008308 sgbH CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006537 sgbH CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003563 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003525 yiaQ CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004585 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008480 sgbH CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004512 sgbH CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007941 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004747 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113648 yiaQ CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0085570 yiaQ CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004438 sgbH CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0101365 sgbH CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005536 sgbH CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004962 sgbH CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005274 sgbH CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001777 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003147 sgbH CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004208 sgbH CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0003131 VCA0242 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000184 sgbH_2 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000514 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21310mutantTn5 InsertionRequest the StrainABE-0011698sgbHsgbH::Tn5KAN-2 at position 434 in Minus orientation ,+ pKD460Blattner Laboratory
FB21311mutantTn5 InsertionRequest the StrainABE-0011698sgbHsgbH::Tn5KAN-2 at position 434 in Minus orientation ,- pKD465Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3743577 to 3754239
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0011682yiaKCDSforward37427333743731Upstream
ABE-0011684yiaLCDSforward37437433744210Upstream
ABE-0011690yiaMCDSforward37443283744801Upstream
ABE-0011692yiaNCDSforward37448043746081Upstream
ABE-0011694yiaOCDSforward37460943747080Upstream
ABE-0011696lyxKCDSforward37470843748580Overlaps Upstream
ABE-0011698sgbHCDSforward37485773749239Matches
ABE-0011700sgbUCDSforward37492323750092Overlaps Downstream
ABE-0011702sgbECDSforward37500863750781Downstream
ABE-0285168ysaCpseudogenecomplement37508133750916Downstream
ABE-0285169ysaDpseudogeneforward37509173751094Downstream
ABE-0011704yiaTCDScomplement37511283751868Downstream
ABE-0011710yiaUCDSforward37519923752966Downstream
ABE-0011712yiaVCDScomplement37529633754099Downstream
ABE-0011714yiaWCDScomplement37541053754428Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.