Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011725 (yiaY) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011725 showshow history
Names
yiaY JW5648 ECK3578 b3589
Product
L-threonine dehydrogenase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3756676 3757827 1152 384
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001670 (IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase gldA) Apr 2008
Automated Process Approved PF00465 (PF00465 Iron-containing alcohol dehydrogenase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001670
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001670
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0046872 metal ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001670
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001670
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name yiaY Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK3578 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW5648 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3589 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product L-threonine dehydrogenase Published Annotation - EcoCyc Accession Number: EG12293
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Uncurated alternate product name putative alcohol dehydrogenase Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name putative oxidoreductase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Approved alternate product name predicted Fe-containing alcohol dehydrogenase Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved alternate product name predicted Fe-containing alcohol dehydrogenase, Pfam00465 family Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Automated Process Approved protein family IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase gldA Protein Sequence Similarity - InterPro Domain: IPR001670
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00465 Iron-containing alcohol dehydrogenase Protein Sequence Similarity - PFAM Model Name: PF00465
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Uncurated EC number 1.-.-.- Published Annotation - Database Name: EC2GO: GO:0016491
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 1.1.1.1 Published Annotation - Swiss-Prot Accession Number: P37686 Feb 2006
Person Uncurated MultiFun 1.7.1 (metabolism; central intermediary metabolism; unassigned reversible reactions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12293 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:48994951 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P37686 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P37686 Published Annotation - Swiss-Prot Accession Number: P37686 Jan 2005
Automated Process Approved db xref ASAP:ABE-0011725 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948102 Published Annotation - Entrez Gene Database ID: 948102
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved function putative enzyme; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note putative oxidoreductase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAT48195.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved sequence correction version m56: C-term. change, aa 380-382 AAR to RAAM Experimental - GenBank Accession Number: AG613301
Reference: Escherichia coli 		May 2004
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.26
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001670
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001670
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0046872 metal ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001670
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001670
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0003312 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001646 yiaY CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001852 yiaY CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0004496 yiaY CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001736 yiaY CDS
Ortholog
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000185 adhB_1 CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0000686 adhB_2 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006607 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0020276 yiaY CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002255 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001456 adhB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004713 adhB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003730 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007480 adhB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003648 yiaY CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000588 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005457 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006996 adhB CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080587 yiaY CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004099 adhB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005042 adh4 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006923 adhB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005128 adhB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004083 yiaY CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008519 adhB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004911 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008291 adhB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006806 adhB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006353 adhB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005072 adhB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009794 adhB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005155 adhB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007606 adhB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005391 adhB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005456 adhB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005298 adhB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005185 adhB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005784 adhB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028656 yiaY CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005362 adhB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008483 adhB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004271 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003345 yiaY CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003776 yiaY CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004199 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004246 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004017 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004121 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178265 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003938 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003914 adhB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134539 yiaY CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002834 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004140 yiaY CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0004096 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006481 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0140332 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004359 adhB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004159 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006089 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007949 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004755 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265056 adhB CDS
Person Approved Go view Shigella boydii 227 ADV-0003917 yiaY CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009425 adhB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003133 adhB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075421 yiaY CDS
Person Approved Go view Shigella flexneri 301 ABT-0089849 yiaY CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004193 yiaY CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002683 yiaY CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002479 adhB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002961 adhB pseudogene
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235324 eutG CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004851 fucO CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007962 fucO CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002981 CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0116419 CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006760 fucO CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006959 fucO CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003565 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005618 fucO CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007446 fucO CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030209 CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004804 fucO CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004021 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004381 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007785 fucO CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000413 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000477 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004565 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0004711 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001131 CDS
Molecular Interactions to toptop
Author Approval Feature Name Technique Evidence Comment Annotated
Person Approved ABE-0011725 yiaY lambda repressor assay Doodle - bnumber: b3589 Oct 2003
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3751676 to 3762827
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0011704yiaTCDScomplement37511283751868Downstream
ABE-0011710yiaUCDSforward37519923752966Downstream
ABE-0011712yiaVCDScomplement37529633754099Downstream
ABE-0011714yiaWCDScomplement37541053754428Downstream
ABE-0285622repeat_regionforward37548603754941Downstream
ABE-0011718aldBCDScomplement37549733756511Downstream
ABE-0011725yiaYCDScomplement37566763757827Matches
ABE-0011729selBCDScomplement37580173759861Upstream
ABE-0011731selACDScomplement37598583761249Upstream
ABE-0011736yibFCDScomplement37613473761955Upstream
ABE-0011742rhsACDSforward37621833766316Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.