Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011729 (selB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011729 showshow history
Names
selB JW3563 ECK3579 fdhA b3590
Product
selenocysteinyl-tRNA-specific translation factor
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3758017 3759861 1845 615
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004535 (IPR004535 Translation elongation factor, selenocysteine-specific) Apr 2008
Automated Process Approved IPR011991 (IPR011991 ArsR-like helix-turn-helix domain) Apr 2008
Automated Process Approved IPR009000 (IPR009000 Translation protein, beta-barrel domain superfamily) Apr 2008
Automated Process Approved IPR000795 (IPR000795 Translational (tr)-type GTP-binding domain) Apr 2008
Automated Process Approved IPR015191 (IPR015191 Translation elongation factor SelB, winged helix, type 3) Apr 2008
Automated Process Approved IPR015190 (IPR015190 Translation elongation factor SelB, winged helix, type 2) Apr 2008
Automated Process Approved IPR004161 (IPR004161 Translation elongation factor EFTu-like, domain 2) Apr 2008
Automated Process Approved IPR036390 (IPR036390 Winged helix DNA-binding domain superfamily) Jul 2018
Automated Process Approved IPR027417 (IPR027417 P-loop containing nucleoside triphosphate hydrolase) Jul 2018
Automated Process Approved IPR009001 (IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal) Jul 2018
Automated Process Approved PF00009 (PF00009 Elongation factor Tu GTP binding domain) Jul 2018
Automated Process Approved PF03144 (PF03144 Elongation factor Tu domain 2) Jul 2018
Automated Process Approved PF09106 (PF09106 Elongation factor SelB, winged helix) Jul 2018
Automated Process Approved PF09107 (PF09107 Elongation factor SelB, winged helix) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0001514 selenocysteine incorporation Experimental - PubMed ID: 2531290
Reference: Escherichia coli K-12 MG1655 		Jan 2007
Automated Process Approved GO biological process GO:0001514 selenocysteine incorporation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004535
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004535
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Sequence or Structural Similarity - InterPro Domain: IPR004535
Reference: Escherichia coli K-12 MG1655 		Jan 2007
Automated Process Uncurated GO molecular function GO:0003723 RNA binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR015190, IPR015191, IPR004535
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0003924 GTPase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000795
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003746 translation elongation factor activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004535
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO molecular function GO:0003746 translation elongation factor activity GO Inferred from Sequence or Structural Similarity - InterPro Domain: IPR004535
Reference: Escherichia coli K-12 MG1655 		Jan 2007
Automated Process Approved GO molecular function GO:0005525 GTP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004535
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name selB Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK3579 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW3563 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym fdhA Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved locus tag b3590 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product selenocysteinyl-tRNA-specific translation factor Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name selenocysteinyl-tRNA-specific translation factor Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family IPR004535 Translation elongation factor, selenocysteine-specific Protein Sequence Similarity - InterPro Domain: IPR004535
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011991 ArsR-like helix-turn-helix domain Protein Sequence Similarity - InterPro Domain: IPR011991
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000795 Translational (tr)-type GTP-binding domain Protein Sequence Similarity - InterPro Domain: IPR000795
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR009000 Translation protein, beta-barrel domain superfamily Protein Sequence Similarity - InterPro Domain: IPR009000
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00009 Elongation factor Tu GTP binding domain Protein Sequence Similarity - PFAM Model Name: PF00009
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF09107 Elongation factor SelB, winged helix Protein Sequence Similarity - PFAM Model Name: PF09107
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036390 Winged helix DNA-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036390
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR027417 P-loop containing nucleoside triphosphate hydrolase Protein Sequence Similarity - InterPro Domain: IPR027417
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal Protein Sequence Similarity - InterPro Domain: IPR009001
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF09106 Elongation factor SelB, winged helix Protein Sequence Similarity - PFAM Model Name: PF09106
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR004161 Translation elongation factor EFTu-like, domain 2 Protein Sequence Similarity - InterPro Domain: IPR004161
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR015190 Translation elongation factor SelB, winged helix, type 2 Protein Sequence Similarity - InterPro Domain: IPR015190
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR015191 Translation elongation factor SelB, winged helix, type 3 Protein Sequence Similarity - InterPro Domain: IPR015191
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF03144 Elongation factor Tu domain 2 Protein Sequence Similarity - PFAM Model Name: PF03144
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated MultiFun 2.3.2 (information transfer; protein related; translation) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948103 Published Annotation - Entrez Gene Database ID: 948103
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P14081 Published Annotation - Swiss-Prot Accession Number: P14081 Jan 2005
Automated Process Approved db xref GI:2367247 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P14081 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10942 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0011729 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function factor; Proteins - translation and modification Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Uncurated molecular interaction Interacts with the product of srmB ASAP:8478:(interacting residues not known); by MALDI-TOF and LC-MS Experimental - PubMed ID: 15690043
Reference: Escherichia coli K-12 W3110 		Mar 2005
Person Uncurated molecular interaction Interacts with the product of dnaJ ASAP:54:(interacting residues not known); by MALDI-TOF and LC-MS Experimental - PubMed ID: 15690043
Reference: Escherichia coli K-12 W3110 		Mar 2005
Person Uncurated molecular interaction Interacts with the product of yfiF ASAP:8497:(interacting residues not known); by MALDI-TOF and LC-MS Experimental - PubMed ID: 15690043
Reference: Escherichia coli K-12 W3110 		Mar 2005
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006412 - translation Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76614.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 8.46
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model the E-matrix Experimental - PubMed ID: 19282977
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0001514 selenocysteine incorporation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004535
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0001514 selenocysteine incorporation Experimental - PubMed ID: 2531290
Reference: Escherichia coli K-12 MG1655 		Jan 2007
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Sequence or Structural Similarity - InterPro Domain: IPR004535
Reference: Escherichia coli K-12 MG1655 		Jan 2007
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004535
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0003723 RNA binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR015190, IPR015191, IPR004535
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0003924 GTPase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000795
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005525 GTP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004535
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003746 translation elongation factor activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004535
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO molecular function GO:0003746 translation elongation factor activity GO Inferred from Sequence or Structural Similarity - InterPro Domain: IPR004535
Reference: Escherichia coli K-12 MG1655 		Jan 2007
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0005445 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002244 selB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002214 selB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002098 selB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002284 selB CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004160 selB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004347 selB CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000685 selB CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000443 selB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001458 selB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004712 selB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003731 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007479 selB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003649 selB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000587 selB CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005456 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006997 selB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005261 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080588 selB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004100 selB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005041 selB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006924 selB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005127 selB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004084 selB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008520 selB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004912 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008292 selB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006807 selB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006354 selB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005071 selB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009795 selB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005154 selB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007607 selB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005392 selB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005457 selB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005299 selB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005186 selB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005785 selB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028657 selB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005361 selB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008484 selB CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003346 selB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003775 selB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004198 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004247 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004016 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004122 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003939 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003915 selB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134540 selB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002835 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004141 selB CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003986 selB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002569 selB CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0007837 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0147959 selB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008063 selB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004158 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004219 selB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008314 selB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011512 selB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011463 selB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005182 selB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008363 selB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005712 selB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006088 selB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006913 selB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007458 selB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008315 selB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006530 selB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003570 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003532 selB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004594 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008487 selB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004505 selB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007950 selB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004756 selB CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113627 selB CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085563 selB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004446 selB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0101391 selB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005529 selB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004955 selB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005281 selB CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000885 selB CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0263644 selB CDS
Person Approved Go view Shigella boydii 227 ADV-0003918 selB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009426 selB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003132 selB CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004746 selB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075420 selB CDS
Person Approved Go view Shigella flexneri 301 ABT-0089850 selB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004192 selB CDS
Person Approved Go view Shigella sonnei 046 ADD-0004159 selB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000173 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011912 selB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002369 selB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002116 selB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003004 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0285056 selB pseudogene
Person Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003630 selB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007243 selB CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0256358 selB pseudogene
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005807 selB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003732 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006689 selB CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033872 selB CDS
Person Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004447 selB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000049 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004750 selB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0008153 selB CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0004052 selB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004943 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000052 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0004717 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001130 selB CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3753017 to 3764861
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0011712yiaVCDScomplement37529633754099Downstream
ABE-0011714yiaWCDScomplement37541053754428Downstream
ABE-0285622repeat_regionforward37548603754941Downstream
ABE-0011718aldBCDScomplement37549733756511Downstream
ABE-0011725yiaYCDScomplement37566763757827Downstream
ABE-0011729selBCDScomplement37580173759861Matches
ABE-0011731selACDScomplement37598583761249Overlaps Upstream
ABE-0011736yibFCDScomplement37613473761955Upstream
ABE-0011742rhsACDSforward37621833766316Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.