Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011761 (mtlA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011761 showshow history
Names
mtlA JW3573 ECK3588 mtlC b3599
Product
PTS system mannitol-specific EIIABC component
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3772281 3774194 1914 638
Sequence

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR013011 (IPR013011 Phosphotransferase system, EIIB component, type 2) Apr 2008
Automated Process Approved IPR002178 (IPR002178 PTS EIIA type-2 domain) Apr 2008
Automated Process Approved IPR003501 (IPR003501 Phosphotransferase system, EIIB component, type 2/3) Apr 2008
Automated Process Approved IPR013014 (IPR013014 Phosphotransferase system, EIIC component, type 2) Apr 2008
Automated Process Approved IPR003352 (IPR003352 Phosphotransferase system, EIIC) Apr 2008
Automated Process Approved IPR004718 (IPR004718 Phosphotransferase system, mannitol-specific enzyme IIC) Apr 2008
Automated Process Approved IPR016152 (IPR016152 Phosphotransferase/anion transporter) Jul 2018
Automated Process Approved IPR036095 (IPR036095 PTS system IIB component-like superfamily) Jul 2018
Automated Process Approved PF00359 (PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2) Jul 2018
Automated Process Approved PF02378 (PF02378 Phosphotransferase system, EIIC) Jul 2018
Automated Process Approved PF02302 (PF02302 PTS system, Lactose/Cellobiose specific IIB subunit) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002178
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002178
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004718
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003352
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003352, IPR003501, IPR004718, IPR036095
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005351 carbohydrate:proton symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013011
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name mtlA Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym mtlC Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ECK3588 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW3573 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3599 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product PTS system mannitol-specific EIIABC component Experimental - PubMed ID: 8841134
Reference: Escherichia coli K-12 		Mar 2008
Automated Process Approved alternate product name fused mannitol-specific PTS enzymes: IIA components/IIB components/IIC components Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated alternate product name PTS family enzyme IICB (N-terminal); enzyme IIA (C-terminal), mannitol-specific Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name PTS system, mannitol-specific enzyme IIABC components Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family IPR036095 PTS system IIB component-like superfamily Protein Sequence Similarity - InterPro Domain: IPR036095
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR013011 Phosphotransferase system, EIIB component, type 2 Protein Sequence Similarity - InterPro Domain: IPR013011
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR002178 PTS EIIA type-2 domain Protein Sequence Similarity - InterPro Domain: IPR002178
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR003501 Phosphotransferase system, EIIB component, type 2/3 Protein Sequence Similarity - InterPro Domain: IPR003501
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004718 Phosphotransferase system, mannitol-specific enzyme IIC Protein Sequence Similarity - InterPro Domain: IPR004718
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR016152 Phosphotransferase/anion transporter Protein Sequence Similarity - InterPro Domain: IPR016152
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR013014 Phosphotransferase system, EIIC component, type 2 Protein Sequence Similarity - InterPro Domain: IPR013014
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR003352 Phosphotransferase system, EIIC Protein Sequence Similarity - InterPro Domain: IPR003352
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Protein Sequence Similarity - PFAM Model Name: PF00359
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF02378 Phosphotransferase system, EIIC Protein Sequence Similarity - PFAM Model Name: PF02378
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Protein Sequence Similarity - PFAM Model Name: PF02302
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 2.7.1.- Published Annotation - Swiss-Prot Accession Number: P00550 Feb 2006
Person Approved EC number 2.7.1.69 Published Annotation - Swiss-Prot Accession Number: P00550 Feb 2006
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.115 (transport; substrate; mannitol) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.4.A.2 (transport; Group Translocators; Phosphotransferase Systems (PEP-dependent PTS); The PTS Fructose-Mannitol (Fru) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0011761 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1790027 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P00550 Published Annotation - Swiss-Prot Accession Number: P00550 Jan 2005
Automated Process Approved db xref EcoGene:EG10615 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948118 Published Annotation - Entrez Gene Database ID: 948118
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P00550 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Transport of small molecules: Carbohydrates, organic acids, alcohols Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note PTS system, mannitol-specific enzyme IIABC components; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76623.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002178
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002178
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003352
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004718
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005351 carbohydrate:proton symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013011
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003352, IPR003501, IPR004718, IPR036095
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001776 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001645 mtlA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001851 mtlA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001101 mtlA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002029 mtlA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001545 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001061 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129842 mtlA CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0105243 mtlA CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104689 mtlA CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004156 mtlA CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000178 mtlA_1 CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0000680 mtlA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004442 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0016119 mtlA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0004188 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000438 mtlA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0306979 mtlA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003871 mtlA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003527 mtlA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001465 mtlA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004702 mtlA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003736 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007470 mtlA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003654 mtlA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000582 mtlA CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005445 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007008 mtlA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008502 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080593 mtlA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004371 mtlA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005025 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006933 mtlA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010050 mtlA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004089 mtlA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008530 mtlA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004921 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008300 mtlA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006814 mtlA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006364 mtlA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005061 mtlA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009803 mtlA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005144 mtlA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007615 mtlA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005401 mtlA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005467 mtlA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005309 mtlA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005195 mtlA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005794 mtlA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028666 mtlA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005356 mtlA_2 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008494 mtlA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004264 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003353 mtlA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003766 mtlA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004438 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004262 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004269 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004127 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178273 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003949 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003929 mtlA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134549 mtlA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002844 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004146 mtlA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003618 mtlA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000792 mtlA CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003990 mtlA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002563 mtlA CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003216 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000210 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003350 mtlA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000631 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000113 mtlA CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0004270 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0007854 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003547 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0286340 mtlA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007095 mtlA CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060288 mtlA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000054 mtlA CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001231 mtlA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000195 mtlA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009476 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008068 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004147 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004222 mtlA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008317 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011525 mtlA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011452 mtlA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005179 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008366 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005715 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006085 mtlA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006916 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007461 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008318 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006527 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003573 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003535 mtlA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004597 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008490 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004502 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007953 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004759 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113619 mtlA CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0085560 mtlA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004449 mtlA CDS
Person Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0101408 mtlA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005523 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004949 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005284 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000904 mtlA CDS
Person Approved Go view Shigella boydii 227 ADV-0003925 mtlA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009437 mtlA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075415 mtlA CDS
Person Approved Go view Shigella flexneri 301 ABT-0089855 mtlA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004187 mtlA CDS
Person Approved Go view Shigella sonnei 046 ADD-0004150 mtlA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0003938 VCA1045 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000190 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011959 mtlA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002385 mtlA_1 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002098 mtlA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003021 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243841 mtlA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007903 mtlA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003609 mtlA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007227 mtlA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003342 mtlA CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0129032 mtlA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005791 mtlA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006393 mtlA CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006183 mtlA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006673 mtlA CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033887 mtlA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006685 mtlA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004466 mtlA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000030 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004937 mtlA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0008167 mtlA CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0004038 mtlA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004922 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000031 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0004754 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001125 mtlA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21326mutantTn5 InsertionRequest the StrainABE-0011761mtlAmtlA::Tn5KAN-I-SceI at position 635 in Minus orientation ,- pKD460Blattner Laboratory
FB21327mutantTn5 InsertionRequest the StrainABE-0011761mtlAmtlA::Tn5KAN-I-SceI at position 635 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3767281 to 3779194
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0011746yibJpseudogeneforward37672213768165Upstream
ABE-0011750yibGCDSforward37681773768638Upstream
ABE-0285244yibSpseudogeneforward37686413768829Upstream
ABE-0285245yibWpseudogeneforward37688923769256Upstream
ABE-0285196yibVpseudogeneforward37693453769783Upstream
ABE-0285246yibUpseudogeneforward37699463770178Upstream
ABE-0011752yibHCDScomplement37702433771379Upstream
ABE-0011754yibICDScomplement37713823771744Upstream
ABE-0011761mtlACDSforward37722813774194Matches
ABE-0285623repeat_regionforward37742363774334Downstream
ABE-0011767mtlDCDSforward37744243775572Downstream
ABE-0011769mtlRCDSforward37755723776159Downstream
ABE-0285075yibTCDScomplement37761713776380Downstream
ABE-0011773yibLCDSforward37766653777027Downstream
ABE-0285624repeat_regionforward37770643777097Downstream
ABE-0011777lldPCDSforward37773993779054Downstream
ABE-0011782lldRCDSforward37790543779830Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.