Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011767 (mtlD) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011767 showshow history
Names
mtlD JW3574 ECK3589 b3600
Product
mannitol-1-phosphate 5-dehydrogenase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3774424 3775572 1149 383
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001352
EnteroFam0011767: Trusted threshold=1004.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR000669 (IPR000669 Mannitol dehydrogenase) Apr 2008
Automated Process Approved IPR013328 (IPR013328 6-phosphogluconate dehydrogenase, domain 2) Apr 2008
Automated Process Approved IPR013131 (IPR013131 Mannitol dehydrogenase, N-terminal) Apr 2008
Automated Process Approved IPR008927 (IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily) Apr 2008
Automated Process Approved IPR013118 (IPR013118 Mannitol dehydrogenase, C-terminal) Apr 2008
Automated Process Approved IPR036291 (IPR036291 NAD(P)-binding domain superfamily) Jul 2018
Automated Process Approved PF01232 (PF01232 Mannitol dehydrogenase Rossmann domain) Jul 2018
Automated Process Approved PF08125 (PF08125 Mannitol dehydrogenase C-terminal domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR013131, IPR013118, IPR008927
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000669
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0050662 (OBSOLETE) coenzyme binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013328
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013328
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000669
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name mtlD Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK3589 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW3574 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3600 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product mannitol-1-phosphate 5-dehydrogenase Published Annotation - EcoCyc Accession Number: EG10616
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Uncurated alternate product name mannitol-1-phosphate dehydrogenase, NAD(P)-binding Published Annotation - Database Name: GenProtEC Jan 2006
Automated Process Approved alternate product name mannitol-1-phosphate dehydrogenase, NAD-dependent Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved alternate product name mannitol-1-phosphate dehydrogenase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0011767: Trusted threshold=1004.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001352
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR008927
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000669 Mannitol dehydrogenase Protein Sequence Similarity - InterPro Domain: IPR000669
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013328 6-phosphogluconate dehydrogenase, domain 2 Protein Sequence Similarity - InterPro Domain: IPR013328
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01232 Mannitol dehydrogenase Rossmann domain Protein Sequence Similarity - PFAM Model Name: PF01232
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR013131 Mannitol dehydrogenase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR013131
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036291 NAD(P)-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036291
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF08125 Mannitol dehydrogenase C-terminal domain Protein Sequence Similarity - PFAM Model Name: PF08125
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR013118 Mannitol dehydrogenase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR013118
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 1.1.1.17 Published Annotation - Swiss-Prot Accession Number: P09424 Feb 2006
Automated Process Uncurated EC number 1.-.-.- Published Annotation - Database Name: EC2GO: GO:0016491
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948117 Published Annotation - Entrez Gene Database ID: 948117
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P09424 Published Annotation - Swiss-Prot Accession Number: P09424 Jan 2005
Automated Process Approved db xref GI:1790028 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P09424 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0011767 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10616 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Degradation of small molecules: Carbon compounds Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note mannitol-1-phosphate dehydrogenase; GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76624.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000669
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR013131, IPR013118, IPR008927
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0050662 (OBSOLETE) coenzyme binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013328
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013328
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000669
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001352 mtlD CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001777 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001644 mtlD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001858 mtlD CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001541 mtlD CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002028 mtlD CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001544 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001062 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129841 mtlD CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0105242 mtlD CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104688 mtlD CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004155 mtlD CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004354 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000177 mtlD CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000679 mtlD CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004443 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0016117 mtlD CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0004187 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000437 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0306985 mtlD CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003872 mtlD CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003528 mtlD CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001466 mtlD CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004701 mtlD CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003737 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007469 mtlD CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003655 mtlD CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000581 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005444 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007009 mtlD CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008503 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080594 mtlD CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004372 mtlD CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005024 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006934 mtlD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010051 mtlD CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004090 mtlD CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008531 mtlD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004922 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008301 mtlD CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006815 mtlD CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006365 mtlD CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005060 mtlD CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009804 mtlD CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005143 mtlD CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007616 mtlD CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005402 mtlD CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005468 mtlD CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005310 mtlD CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005196 mtlD CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005795 mtlD CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028667 mtlD CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005354 mtlD CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008495 mtlD CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004263 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003354 mtlD CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003765 mtlD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004437 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004263 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004268 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004128 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178274 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003951 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003930 mtlD CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134550 mtlD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002845 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004147 mtlD CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003617 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000791 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003991 mtlD CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002562 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003215 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000211 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003349 mtlD CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000632 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000112 mtlD CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0004271 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0007853 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003546 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0286339 mtlD CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007094 mtlD CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060289 mtlD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000053 mtlD CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001232 mtlD CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000196 mtlD CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009475 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008069 mtlD CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004146 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004224 mtlD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008318 mtlD CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011531 mtlD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011448 mtlD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005178 mtlD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008367 mtlD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005716 mtlD CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006084 mtlD CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006917 mtlD CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007462 mtlD CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008319 mtlD CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006526 mtlD CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003574 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003537 mtlD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004598 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008491 mtlD CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004501 mtlD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007954 mtlD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004760 mtlD CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113616 mtlD CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085559 mtlD CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004450 mtlD CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0101411 mtlD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005522 mtlD CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004948 mtlD CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000903 CDS
Person Approved Go view Shigella boydii 227 ADV-0003926 mtlD CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009438 mtlD CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075413 mtlD CDS
Person Approved Go view Shigella flexneri 301 ABT-0089856 mtlD CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004186 mtlD CDS
Person Approved Go view Shigella sonnei 046 ADD-0004149 mtlD CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0003939 VCA1046 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000189 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011956 mtlD CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002384 mtlD2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002099 mtlD CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003020 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243840 mtlD CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007902 mtlD CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003610 mtlD CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007228 mtlD CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003343 mtlD CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0129029 mtlD CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005792 mtlD CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006394 mtlD CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003990 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006182 mtlD CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006674 mtlD CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033886 mtlD CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006686 mtlD CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004465 mtlD CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000031 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004936 mtlD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0008166 mtlD CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0004039 mtlD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004923 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000032 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0004764 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001124 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21328mutantTn5 InsertionRequest the StrainABE-0011767mtlDmtlD::Tn5KAN-I-SceI at position 783 in Plus orientation ,- pKD465Blattner Laboratory
FB21329mutantTn5 InsertionRequest the StrainABE-0011767mtlDmtlD::Tn5KAN-I-SceI at position 783 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3769424 to 3780572
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0285196yibVpseudogeneforward37693453769783Upstream
ABE-0285246yibUpseudogeneforward37699463770178Upstream
ABE-0011752yibHCDScomplement37702433771379Upstream
ABE-0011754yibICDScomplement37713823771744Upstream
ABE-0011761mtlACDSforward37722813774194Upstream
ABE-0285623repeat_regionforward37742363774334Upstream
ABE-0011767mtlDCDSforward37744243775572Matches
ABE-0011769mtlRCDSforward37755723776159Overlaps Downstream
ABE-0285075yibTCDScomplement37761713776380Downstream
ABE-0011773yibLCDSforward37766653777027Downstream
ABE-0285624repeat_regionforward37770643777097Downstream
ABE-0011777lldPCDSforward37773993779054Downstream
ABE-0011782lldRCDSforward37790543779830Downstream
ABE-0011784lldDCDSforward37798273781017Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.