Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011777 (lldP) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011777 showshow history
Names
lldP lct JW3578 ECK3593 lctP b3603
Product
L-lactate permease
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3777399 3779054 1656 552
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003804 (IPR003804 L-lactate permease) Apr 2008
Automated Process Approved PF02652 (PF02652 L-lactate permease) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0015727 lactate transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003804
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005887 integral component of plasma membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003804
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0015129 lactate transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003804
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name lldP Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym lctP Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Automated Process Approved synonym lct Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW3578 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK3593 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3603 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product L-lactate permease Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name L-lactate permease Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name L-lactate permease (LctP family) Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family PF02652 L-lactate permease Protein Sequence Similarity - PFAM Model Name: PF02652
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR003804 L-lactate permease Protein Sequence Similarity - InterPro Domain: IPR003804
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.2.A.14 (transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The Lactate Permease (LctP) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.98 (transport; substrate; lactate) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11961 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948114 Published Annotation - Entrez Gene Database ID: 948114
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P33231 Published Annotation - Swiss-Prot Accession Number: P33231 Jan 2005
Automated Process Approved db xref GI:1790031 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P33231 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0011777 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Transport of small molecules: Carbohydrates, organic acids, alcohols Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76627.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0015727 lactate transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003804
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005887 integral component of plasma membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003804
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0015129 lactate transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003804
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002310 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001297 lldP CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001814 glcA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0005973 glcA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000066 glcA CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001139 lldP CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000173 lctP CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0000675 lctP_1 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003743 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003660 lldP CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000574 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005437 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080602 lldP CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004378 lldP CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005018 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004096 lldP CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008539 lldP CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009810 lldP CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028674 lldP CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005347 lldP CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008503 lldP CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004258 CDS
Person Approved Go view Escherichia coli K-12 DH10B AEC-0003357 lldP CDS
Automated Process Approved Go view Escherichia coli K-12 W3110 ADY-0003761 lldP CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004430 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004271 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004263 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004135 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003957 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003937 lldP CDS
Automated Process Approved Go view Escherichia coli Sakai (EHEC) ACA-0134555 lldP CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004153 lldP CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004230 lldP CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003543 lldP CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113606 lldP CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0085553 lldP CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0101427 lldP CDS
Automated Process Approved Go view Shigella boydii 227 ADV-0003938 lldP CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009449 lldP CDS
Automated Process Approved Go view Shigella dysenteriae 197 ADU-0004552 lldP CDS
Automated Process Approved Go view Shigella flexneri 2457T ABQ-0075406 lldP CDS
Automated Process Approved Go view Shigella flexneri 301 ABT-0089864 lldP CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004176 lldP CDS
Automated Process Approved Go view Shigella sonnei 046 ADD-0004143 lldP CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21332mutantTn5 InsertionRequest the StrainABE-0011777lldPlldP::Tn5KAN-I-SceI at position 1097 in Minus orientation ,+ pKD460Blattner Laboratory
FB21333mutantTn5 InsertionRequest the StrainABE-0011777lldPlldP::Tn5KAN-I-SceI at position 1097 in Minus orientation ,- pKD465Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3772399 to 3784054
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0011761mtlACDSforward37722813774194Upstream
ABE-0285623repeat_regionforward37742363774334Upstream
ABE-0011767mtlDCDSforward37744243775572Upstream
ABE-0011769mtlRCDSforward37755723776159Upstream
ABE-0285075yibTCDScomplement37761713776380Upstream
ABE-0011773yibLCDSforward37766653777027Upstream
ABE-0285624repeat_regionforward37770643777097Upstream
ABE-0011777lldPCDSforward37773993779054Matches
ABE-0011782lldRCDSforward37790543779830Overlaps Downstream
ABE-0011784lldDCDSforward37798273781017Downstream
ABE-0011790trmLCDSforward37812153781688Downstream
ABE-0285625repeat_regionforward37816983781726Downstream
ABE-0011793cysECDScomplement37817413782562Downstream
ABE-0011795gpsACDScomplement37826423783661Downstream
ABE-0011798secBCDScomplement37836613784128Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.