Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011784 (lldD) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011784 showshow history
Names
lldD JW3580 ECK3595 lctD lct b3605
Product
L-lactate dehydrogenase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3779827 3781017 1191 397
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR013785 (IPR013785 Aldolase-type TIM barrel) Apr 2008
Automated Process Approved IPR008259 (IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site) Apr 2008
Automated Process Approved IPR012133 (IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent) Apr 2008
Automated Process Approved IPR000262 (IPR000262 FMN-dependent dehydrogenase) Apr 2008
Automated Process Approved PF01070 (PF01070 FMN-dependent dehydrogenase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008259
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009060 aerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0010181 FMN binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012133
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008259
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0009053 (DEPRECATED) electron donor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name lldD Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym lct Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym lctD Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ECK3595 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW3580 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3605 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product L-lactate dehydrogenase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Approved alternate product name L-lactate dehydrogenase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name L-lactate dehydrogenase, FMN-linked Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family IPR000262 FMN-dependent dehydrogenase Protein Sequence Similarity - InterPro Domain: IPR000262
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01070 FMN-dependent dehydrogenase Protein Sequence Similarity - PFAM Model Name: PF01070
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent Protein Sequence Similarity - InterPro Domain: IPR012133
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site Protein Sequence Similarity - InterPro Domain: IPR008259
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013785 Aldolase-type TIM barrel Protein Sequence Similarity - InterPro Domain: IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 1.-.-.- Published Annotation - Database Name: EC2GO: GO:0016491
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 1.1.2.3 Published Annotation - Swiss-Prot Accession Number: P33232 Feb 2006
Person Uncurated MultiFun 1.4.1 (metabolism; energy production/transport; electron donor) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.6 (metabolism; energy metabolism, carbon; aerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.7 (metabolism; energy metabolism, carbon; anaerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P33232 Published Annotation - Swiss-Prot Accession Number: P33232 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P33232 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948121 Published Annotation - Entrez Gene Database ID: 948121
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref ASAP:ABE-0011784 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1790033 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11963 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Energy metabolism, carbon: Aerobic respiration Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note L-lactate dehydrogenase; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0009060 - aerobic respiration; GO_process: GO:0009061 - anaerobic respiration Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76629.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008259
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009060 aerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0010181 FMN binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012133
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008259
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0009053 (DEPRECATED) electron donor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002545 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002096 lldD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002086 lldD CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002195 lldD CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002059 lldD CDS
Ortholog
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003184 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001137 lldD CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003137 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000171 lldD CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0000673 lldD CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001478 lldD CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004692 lldD CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003745 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007461 lldD CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003662 lldD CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000572 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005435 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007018 lldD CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008511 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080604 lldD CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004380 lldD CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005016 lctD CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006942 lldD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010060 lldD CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004098 lldD CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008541 lldD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004932 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008309 lldD CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006823 lldD CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006373 lldD CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005052 lldD CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009812 lldD CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005135 lldD CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007624 lldD CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005410 lldD CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005476 lldD CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005318 lldD CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005204 lldD CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005803 lldD CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028676 lldD CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005345 lldD CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008505 lldD CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003359 lldD CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003759 lldD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004428 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004273 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004261 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003959 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003939 lldD CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134557 lldD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002855 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004155 lldD CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0004398 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001877 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003997 lldD CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002557 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000216 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001528 lldD CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000263 lldD CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003967 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000966 lldD CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003353 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008624 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0004304 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0290616 lldD CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004067 lldD CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060320 lctD CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001248 lctD CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000230 lctD CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009439 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008078 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004140 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004232 lldD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008327 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011575 lldD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011407 lldD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005169 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008376 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005725 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006074 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006926 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007471 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008328 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006517 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003582 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003545 lctD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004609 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008499 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004492 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007963 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004770 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113598 lctD CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0085551 lctD CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004459 lldD CDS
Person Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0101433 lldD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005514 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004942 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008375 CDS
Person Approved Go view Shigella boydii 227 ADV-0003940 lldD CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009451 lldD CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003181 lldD CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004554 lldD CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075404 lldD CDS
Person Approved Go view Shigella flexneri 301 ABT-0089866 lldD CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004174 lldD CDS
Person Approved Go view Shigella sonnei 046 ADD-0004141 lldD CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0003877 VCA0984 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002931 lldD CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237741 lldD CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005810 lldD CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001051 lldD CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005703 lldD CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001851 lldD CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0120508 lldD CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005708 lldD CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005774 lldD CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001952 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009000 lldD CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004874 lldD CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032327 lldD CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007730 lldD CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002899 lldD CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001684 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006545 lldD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006391 lldD CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001650 lldD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002007 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002972 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0004781 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001119 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21336mutantTn5 InsertionRequest the StrainABE-0011784lldDlldD::Tn5KAN-I-SceI at position 519 in Plus orientation ,+ pKD460Blattner Laboratory
FB21337mutantTn5 InsertionRequest the StrainABE-0011784lldDlldD::Tn5KAN-I-SceI at position 519 in Plus orientation ,- pKD465Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3774827 to 3786017
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0011767mtlDCDSforward37744243775572Upstream
ABE-0011769mtlRCDSforward37755723776159Upstream
ABE-0285075yibTCDScomplement37761713776380Upstream
ABE-0011773yibLCDSforward37766653777027Upstream
ABE-0285624repeat_regionforward37770643777097Upstream
ABE-0011777lldPCDSforward37773993779054Upstream
ABE-0011782lldRCDSforward37790543779830Overlaps Upstream
ABE-0011784lldDCDSforward37798273781017Matches
ABE-0011790trmLCDSforward37812153781688Downstream
ABE-0285625repeat_regionforward37816983781726Downstream
ABE-0011793cysECDScomplement37817413782562Downstream
ABE-0011795gpsACDScomplement37826423783661Downstream
ABE-0011798secBCDScomplement37836613784128Downstream
ABE-0011801grxCCDScomplement37841913784442Downstream
ABE-0011805yibNCDScomplement37845843785015Downstream
ABE-0011818gpmMCDSforward37852603786804Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.