Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011793 (cysE) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011793 showshow history
Names
cysE JW3582 ECK3597 b3607
Product
serine acetyltransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3781741 3782562 822 274
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001355
EnteroFam0011793: Trusted threshold=795.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR011004 (IPR011004 Trimeric LpxA-like superfamily) Apr 2008
Automated Process Approved IPR001451 (IPR001451 Hexapeptide repeat) Apr 2008
Automated Process Approved IPR005881 (IPR005881 Serine O-acetyltransferase) Apr 2008
Automated Process Approved IPR010493 (IPR010493 Serine acetyltransferase, N-terminal) Apr 2008
Automated Process Approved PF06426 (PF06426 Serine acetyltransferase, N-terminal) Jul 2018
Automated Process Approved PF00132 (PF00132 Bacterial transferase hexapeptide (six repeats)) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0019344 cysteine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006535 cysteine biosynthetic process from serine GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005881
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005881
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0009001 serine O-acetyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005881
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008415 (DEPRECATED) acyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001451
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name cysE Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW3582 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK3597 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3607 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product serine acetyltransferase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name serine acetyltransferase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0011793: Trusted threshold=795.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001355
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR011004 Trimeric LpxA-like superfamily Protein Sequence Similarity - InterPro Domain: IPR011004
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00132 Bacterial transferase hexapeptide (six repeats) Protein Sequence Similarity - PFAM Model Name: PF00132
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF06426 Serine acetyltransferase, N-terminal Protein Sequence Similarity - PFAM Model Name: PF06426
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR010493 Serine acetyltransferase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR010493
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR005881 Serine O-acetyltransferase Protein Sequence Similarity - InterPro Domain: IPR005881
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001451 Hexapeptide repeat Protein Sequence Similarity - InterPro Domain: IPR001451
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 2.3.1.30 Published Annotation - Swiss-Prot Accession Number: P0A9D4 Feb 2006
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.1.12 (metabolism; building block biosynthesis; amino acids; cysteine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1790035 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A9D4 Published Annotation - Swiss-Prot Accession Number: P0A9D4 Jan 2006
Automated Process Approved db xref ASAP:ABE-0011793 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A9D4 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10187 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948126 Published Annotation - Entrez Gene Database ID: 948126
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved function enzyme; Amino acid biosynthesis: Cysteine Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0019344 - cysteine biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76631.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.26
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006535 cysteine biosynthetic process from serine GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005881
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0019344 cysteine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005881
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0009001 serine O-acetyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005881
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008415 (DEPRECATED) acyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001451
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001355 cysE CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000863 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000330 cysE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000432 cysE CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000778 cysE CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000386 cysE CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001476 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002461 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129324 cysE CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104777 cysE CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104161 cysE CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004475 cysE CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004092 cysE CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000169 cysE_1 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000670 cysE CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0009108 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017711 cysE CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0004076 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000432 cysE CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0296262 cysE CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000168 cysE CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000097 cysE CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001480 cysE CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004690 cysE CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003747 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007459 cysE CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003664 cysE CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000570 cysE CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005433 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007020 cysE CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008513 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080606 cysE CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004382 cysE CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005014 cysE CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006944 cysE CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010062 cysE CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004100 cysE CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008543 cysE CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004934 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008311 cysE CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006825 cysE CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006375 cysE CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005050 cysE CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009814 cysE CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005133 cysE CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007626 cysE CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005412 cysE CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005478 cysE CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005320 cysE CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005206 cysE CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005805 cysE CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028678 cysE CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005343 cysE_2 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008507 cysE CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004254 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003361 cysE CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003757 cysE CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004426 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004275 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004259 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004139 cysE CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178287 cysE CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003961 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003941 cysE CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134559 cysE CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002857 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004157 cysE CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003761 cysE CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000857 cysE CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003999 cysE CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002555 cysE CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004558 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003041 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000046 cysE CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003166 cysE CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000818 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003992 cysE CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000162 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011614 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000677 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287174 cysE CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006928 cysE CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060375 cysE CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000132 cysE CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000044 cysE CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003028 cysE CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009383 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0147828 cysE CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001451 cysE CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008084 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004134 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004237 cysE CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008332 cysE CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011592 cysE CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011387 cysE CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005163 cysE CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008382 cysE CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005731 cysE CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006072 cysE CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006932 cysE CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007477 cysE CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008334 cysE CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006512 cysE CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003587 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003550 cysE CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004615 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008505 cysE CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004487 cysE CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007966 cysE CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004773 cysE CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113583 cysE CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085546 cysE CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004465 cysE CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0101447 cysE CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005509 cysE CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004937 cysE CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008381 cysE CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001049 cysE CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265843 cysE CDS
Person Approved Go view Shigella boydii 227 ADV-0003944 cysE CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009455 cysE CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003184 cysE CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004556 cysE CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075399 cysE CDS
Person Approved Go view Shigella flexneri 301 ABT-0089868 cysE CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004172 cysE CDS
Person Approved Go view Shigella sonnei 046 ADD-0004139 cysE CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002748 VC2649 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000179 cysE CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001339 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000248 cysE CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003177 cysE CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002785 cysE CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001718 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234387 cysE CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004178 cysE CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004143 cysE CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007778 cysE CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003220 cysE CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0115542 cysE CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007912 cysE CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006253 cysE CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000954 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005476 cysE CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007976 cysE CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029658 cysE CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005071 cysE CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004543 cysE CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004608 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004370 cysE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004007 cysE CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000073 cysE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000075 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004910 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0004790 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001117 cysE CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21338mutantTn5 InsertionRequest the StrainABE-0011793cysEcysE::Tn5KAN-I-SceI at position 108 in Minus orientation ,- pKD460Blattner Laboratory
FB21339mutantTn5 InsertionRequest the StrainABE-0011793cysEcysE::Tn5KAN-I-SceI at position 108 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3776741 to 3787562
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0011773yibLCDSforward37766653777027Downstream
ABE-0285624repeat_regionforward37770643777097Downstream
ABE-0011777lldPCDSforward37773993779054Downstream
ABE-0011782lldRCDSforward37790543779830Downstream
ABE-0011784lldDCDSforward37798273781017Downstream
ABE-0011790trmLCDSforward37812153781688Downstream
ABE-0285625repeat_regionforward37816983781726Downstream
ABE-0011793cysECDScomplement37817413782562Matches
ABE-0011795gpsACDScomplement37826423783661Upstream
ABE-0011798secBCDScomplement37836613784128Upstream
ABE-0011801grxCCDScomplement37841913784442Upstream
ABE-0011805yibNCDScomplement37845843785015Upstream
ABE-0011818gpmMCDSforward37852603786804Upstream
ABE-0011820envCCDSforward37868383788097Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.