Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011795 (gpsA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011795 showshow history
Names
gpsA JW3583 ECK3598 b3608
Product
NAD-dependent glycerol-3-phosphate dehydrogenase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3782642 3783661 1020 340
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001356
EnteroFam0011795: Trusted threshold=957.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR006109 (IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal) Apr 2008
Automated Process Approved IPR006168 (IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent) Apr 2008
Automated Process Approved IPR013328 (IPR013328 6-phosphogluconate dehydrogenase, domain 2) Apr 2008
Automated Process Approved IPR008927 (IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily) Apr 2008
Automated Process Approved IPR011128 (IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal) Apr 2008
Automated Process Approved IPR036291 (IPR036291 NAD(P)-binding domain superfamily) Jul 2018
Automated Process Approved PF07479 (PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus) Jul 2018
Automated Process Approved PF01210 (PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006109, IPR011128, IPR008927
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0046168 glycerol-3-phosphate catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011128
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006109
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006071 glycerol metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0006793 phosphorus metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011128
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0051287 NAD binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011128
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0004367 glycerol-3-phosphate dehydrogenase [NAD+] activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006109
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011128
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0050662 (OBSOLETE) coenzyme binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013328
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016614 oxidoreductase activity, acting on CH-OH group of donors GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006109
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013328
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name gpsA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW3583 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK3598 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3608 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product NAD-dependent glycerol-3-phosphate dehydrogenase Protein Sequence Similarity - InterPro Domain: IPR006168
Reference: Escherichia coli K-12 MG1655 		Oct 2022
Protein Family
Person Approved EnteroFam EnteroFam0011795: Trusted threshold=957.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001356
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR036291 NAD(P)-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036291
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Protein Sequence Similarity - PFAM Model Name: PF01210
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR008927
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus Protein Sequence Similarity - PFAM Model Name: PF07479
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal Protein Sequence Similarity - InterPro Domain: IPR011128
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent Protein Sequence Similarity - InterPro Domain: IPR006168
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal Protein Sequence Similarity - InterPro Domain: IPR006109
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013328 6-phosphogluconate dehydrogenase, domain 2 Protein Sequence Similarity - InterPro Domain: IPR013328
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 1.1.1.94 Published Annotation - Swiss-Prot Accession Number: P0A6S7 Feb 2006
Automated Process Uncurated EC number 1.1.1.- Published Annotation - Database Name: EC2GO: GO:0016616
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 1.7.6 (metabolism; central intermediary metabolism; glycerol metabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.8.1 (metabolism; metabolism of other compounds; phosphorous metabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG20091 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A6S7 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0011795 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948125 Published Annotation - Entrez Gene Database ID: 948125
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1790037 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A6S7 Published Annotation - Swiss-Prot Accession Number: P0A6S7 Jan 2006
Person Approved function enzyme; Energy metabolism, carbon: Aerobic respiration Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006071 - glycerol metabolic process; GO_process: GO:0006793 - phosphorus metabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76632.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0046168 glycerol-3-phosphate catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011128
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006109, IPR011128, IPR008927
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0006793 phosphorus metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006109
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006071 glycerol metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011128
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0016614 oxidoreductase activity, acting on CH-OH group of donors GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006109
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0051287 NAD binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011128
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0004367 glycerol-3-phosphate dehydrogenase [NAD+] activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006109
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0050662 (OBSOLETE) coenzyme binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013328
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013328
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011128
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001356 gpsA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000864 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000480 gpsA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000471 gpsA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000779 gpsA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000615 gpsA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001477 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002462 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004474 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004093 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000168 gpsA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000669 gpsA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0009109 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017710 gpsA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0004077 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000431 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0296256 gpsA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000167 gpsA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000096 gpsA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001481 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004689 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003748 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007458 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003665 gpsA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000569 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005431 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007021 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008514 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080607 gpsA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004383 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005013 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006945 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010063 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004101 gpsA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008544 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004935 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008312 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006826 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006376 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005049 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009815 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005132 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007627 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005413 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005479 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005321 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005207 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005806 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028679 gpsA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005342 gpsA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008508 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004253 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003362 gpsA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003756 gpsA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004425 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004276 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004258 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004140 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178288 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003962 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003942 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134560 gpsA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002858 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004158 gpsA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003760 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000856 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004000 gpsA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002554 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004556 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003042 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000047 gpsA CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003167 gpsA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000817 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003993 gpsA CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000161 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011615 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000678 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287173 gpsA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006929 gpsA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060374 gpsA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000134 gpsA CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000043 gpsA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003027 gpsA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009384 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0147831 gpsA CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0002257 gpsA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008085 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004132 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004238 gpsA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008333 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011599 gpsA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011382 gpsA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005162 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008383 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005732 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006071 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006933 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007478 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008335 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006511 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003588 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003551 gpsA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004616 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008506 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004486 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007967 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004774 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113580 gpsA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085545 gpsA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004466 gpsA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0101450 gpsA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005508 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004936 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008382 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001048 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0263591 gpsA CDS
Person Approved Go view Shigella boydii 227 ADV-0003945 gpsA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009456 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003185 CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004557 gpsA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075398 gpsA CDS
Person Approved Go view Shigella flexneri 301 ABT-0089869 gpsA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004171 gpsA CDS
Person Approved Go view Shigella sonnei 046 ADD-0004138 gpsA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002750 VC2651 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000065 gpsA CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000181 gpsA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001338 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000244 gpsA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003176 gpsA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002784 gpsA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001719 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234385 gpsA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004177 gpsA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004144 gpsA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007779 gpsA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003222 gpsA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0115538 gpsA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007913 gpsA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006254 gpsA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000953 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005477 gpsA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007975 gpsA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029659 gpsA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005072 gpsA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004544 gpsA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004609 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004369 gpsA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004006 gpsA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000071 gpsA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000073 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004911 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0004798 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001116 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21340mutantTn5 InsertionRequest the StrainABE-0011795gpsAgpsA::Tn5KAN-I-SceI at position 476 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3777642 to 3788661
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0011777lldPCDSforward37773993779054Downstream
ABE-0011782lldRCDSforward37790543779830Downstream
ABE-0011784lldDCDSforward37798273781017Downstream
ABE-0011790trmLCDSforward37812153781688Downstream
ABE-0285625repeat_regionforward37816983781726Downstream
ABE-0011793cysECDScomplement37817413782562Downstream
ABE-0011795gpsACDScomplement37826423783661Matches
ABE-0011798secBCDScomplement37836613784128Overlaps Upstream
ABE-0011801grxCCDScomplement37841913784442Upstream
ABE-0011805yibNCDScomplement37845843785015Upstream
ABE-0011818gpmMCDSforward37852603786804Upstream
ABE-0011820envCCDSforward37868383788097Upstream
ABE-0011824yibQCDSforward37881013789060Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.