Escherichia coli K-12 MG1655
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011801 (grxC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011801 showshow history
Names
grxC yibM JW3585 ECK3600 b3610
Product
glutaredoxin 3
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3784191 3784442 252 84
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR012335 (IPR012335 (DEPRECATED) Thioredoxin fold) Apr 2008
Automated Process Approved IPR012336 (IPR012336 Thioredoxin-like fold) Apr 2008
Automated Process Approved IPR011767 (IPR011767 Glutaredoxin active site) Apr 2008
Automated Process Approved IPR011900 (IPR011900 Glutaredoxin, GrxC) Apr 2008
Automated Process Approved IPR014025 (IPR014025 Glutaredoxin subgroup) Apr 2008
Automated Process Approved IPR002109 (IPR002109 Glutaredoxin) Apr 2008
Automated Process Approved IPR036249 (IPR036249 Thioredoxin-like superfamily) Jul 2018
Automated Process Approved PF00462 (PF00462 Glutaredoxin) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0045454 cell redox homeostasis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011767
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011767
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Approved GO molecular function GO:0015035 protein-disulfide reductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002109
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011767
Reference: Escherichia coli K-12 MG1655
Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name grxC Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Person Approved synonym ECK3600 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW3585 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym yibM Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved locus tag b3610 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product glutaredoxin 3 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name glutaredoxin 3 Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Jan 2006
Protein Family
Automated Process Approved protein family IPR011767 Glutaredoxin active site Protein Sequence Similarity - InterPro Domain: IPR011767
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR012335 (DEPRECATED) Thioredoxin fold Protein Sequence Similarity - InterPro Domain: IPR012335
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR011900 Glutaredoxin, GrxC Protein Sequence Similarity - InterPro Domain: IPR011900
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR012336 Thioredoxin-like fold Protein Sequence Similarity - InterPro Domain: IPR012336
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR014025 Glutaredoxin subgroup Protein Sequence Similarity - InterPro Domain: IPR014025
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family PF00462 Glutaredoxin Protein Sequence Similarity - PFAM Model Name: PF00462
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR002109 Glutaredoxin Protein Sequence Similarity - InterPro Domain: IPR002109
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR036249 Thioredoxin-like superfamily Protein Sequence Similarity - InterPro Domain: IPR036249
Reference: Escherichia coli K-12 MG1655
Jul 2018
Other
Person Uncurated MultiFun 1.6.15.2 (metabolism; macromolecules (cellular constituent) biosynthesis; large molecule carriers; thioredoxin, glutaredoxin) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref EcoGene:EG12294 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GI:1790039 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GeneID:948132 Published Annotation - Entrez Gene Database ID: 948132
Reference: Escherichia coli K-12 MG1655
Jun 2009
Person Approved db xref UniProtKB:P0AC62 Published Annotation - Swiss-Prot Accession Number: P0AC62 Jan 2006
Automated Process Approved db xref ASAP:ABE-0011801 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AC62 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved function enzyme; Biosynthesis of cofactors, carriers: Thioredoxin, glutaredoxin, glutathione Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Automated Process Approved protein id AAC76634.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655
Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0045454 cell redox homeostasis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011767
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011767
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Approved GO molecular function GO:0015035 protein-disulfide reductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002109
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011767
Reference: Escherichia coli K-12 MG1655
Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0003412 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001884 grxC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002063 grxC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000780 grxC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002190 grxC CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004472 grxC CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004095 grxC CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000166 grxC CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000667 grxC CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000429 grxC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0296251 grxC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000165 grxC3 CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000094 grxC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001483 grxC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004687 grxC CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003750 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007456 grxC CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0005377 CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000567 grxC CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005429 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007023 grxC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008516 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080610 grxC CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004385 grxC CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005011 grxC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006947 grxC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010065 grxC CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004103 grxC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008546 grxC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004937 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008314 grxC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006828 grxC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006378 grxC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005047 grxC CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009817 grxC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005130 grxC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007629 grxC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005415 grxC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005481 grxC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005323 grxC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005209 grxC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005808 grxC CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028681 grxC CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005340 grxC CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008510 grxC CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004251 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003364 grxC CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003754 grxC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004423 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004278 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004256 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004143 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178290 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003964 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003944 grxC CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134562 grxC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002860 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004161 grxC CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003758 grxC CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000854 grxC CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004002 grxC CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002552 grxC CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003044 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000049 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003170 grxC CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000815 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003995 grxC CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000159 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011617 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000680 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287171 grxC CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006931 grxC CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0005403 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008087 grxC CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004130 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004240 grxC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008335 grxC CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011606 grxC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011377 grxC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005160 grxC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008385 grxC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005734 grxC CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006069 grxC CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006935 grxC CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007480 grxC CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008337 grxC CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006509 grxC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003590 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003553 grxC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004618 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008508 grxC CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004484 grxC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007969 grxC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004776 grxC CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113576 grxC CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0085543 grxC CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004468 grxC CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0101456 grxC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005506 grxC CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004934 grxC CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008384 grxC CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001046 grxC CDS
Person Approved Go view Shigella boydii 227 ADV-0003947 grxC CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009458 grxC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003187 grxC CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004559 grxC CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075396 grxC CDS
Person Approved Go view Shigella flexneri 301 ABT-0089871 grxC CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004169 grxC CDS
Person Approved Go view Shigella sonnei 046 ADD-0004136 grxC CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000066 grxC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001336 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000239 grxC CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003174 grxC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002782 grxC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001721 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234383 grxC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004175 grxC CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004147 grxC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007781 grxC CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003224 grxC CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0115535 grxC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007915 grxC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006256 grxC CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001766 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005479 grxC CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007973 grxC CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029661 grxC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005074 grxC CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004547 grxC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004612 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004367 grxC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004004 grxC CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000069 grxC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000071 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004914 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0004806 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001114 grxC CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)

Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3779191 to 3789442
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0011782lldRCDSforward37790543779830Downstream
ABE-0011784lldDCDSforward37798273781017Downstream
ABE-0011790trmLCDSforward37812153781688Downstream
ABE-0285625repeat_regionforward37816983781726Downstream
ABE-0011793cysECDScomplement37817413782562Downstream
ABE-0011795gpsACDScomplement37826423783661Downstream
ABE-0011798secBCDScomplement37836613784128Downstream
ABE-0011801grxCCDScomplement37841913784442Matches
ABE-0011805yibNCDScomplement37845843785015Upstream
ABE-0011818gpmMCDSforward37852603786804Upstream
ABE-0011820envCCDSforward37868383788097Upstream
ABE-0011824yibQCDSforward37881013789060Upstream
ABE-0011826waaHCDScomplement37890473790081Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.