Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011824 (yibQ) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011824 showshow history
Names
yibQ JW5645 ECK3604 b3614
Product
divergent polysaccharide deacetylase domain-containing protein
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3788101 3789060 960 320
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006837 (IPR006837 Divergent polysaccharide deacetylase) Apr 2008
Automated Process Approved IPR011330 (IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel) Jul 2018
Automated Process Approved PF04748 (PF04748 Divergent polysaccharide deacetylase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011330
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011330
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name yibQ Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW5645 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK3604 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3614 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product divergent polysaccharide deacetylase domain-containing protein Published Annotation - EcoCyc Accession Number: EG12298
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Approved alternate product name predicted polysaccharide deacetylase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name conserved hypothetical protein Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family IPR006837 Divergent polysaccharide deacetylase Protein Sequence Similarity - InterPro Domain: IPR006837
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel Protein Sequence Similarity - InterPro Domain: IPR011330
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF04748 Divergent polysaccharide deacetylase Protein Sequence Similarity - PFAM Model Name: PF04748
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12298 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P37691 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0011824 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948128 Published Annotation - Entrez Gene Database ID: 948128
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P37691 Published Annotation - Swiss-Prot Accession Number: P37691 Jan 2005
Automated Process Approved db xref GI:87082298 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76638.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.50
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011330
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011330
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000868 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001181 yibQ CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000938 yibQ CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001447 yibQ CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001075 yibQ CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001481 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004467 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004099 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000162 CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0000663 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0009115 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0017705 yibQ CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0004081 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000425 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0296241 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000162 yigQ CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000091 yigQ CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001487 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004683 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003754 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007452 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003671 yibQ CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000563 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005423 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007027 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008520 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080617 yibQ CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004389 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005007 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006951 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010069 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004107 yibQ CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008550 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008318 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006832 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006382 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005043 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009821 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005126 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007633 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005419 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005485 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005327 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005213 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005812 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028685 yibQ CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005336 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008514 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004247 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003368 yibQ CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003750 yibQ CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004418 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004283 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004251 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004149 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178294 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003969 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003948 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134566 yibQ CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002866 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004168 yibQ CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003754 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004007 yibQ CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002548 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004550 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003047 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000052 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003173 yibQ CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000812 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003998 yibQ CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000156 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011620 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000683 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287168 yibQ CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006934 yigQ CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060370 CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000099 CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001262 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003023 CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009389 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0147838 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0005408 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008091 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004126 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004244 yigQ CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008339 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011619 yigQ CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011363 yigQ CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005156 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008389 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005738 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006065 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006940 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007485 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008341 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006505 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003594 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003557 yigQ CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004622 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008512 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004480 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007973 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004780 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113569 CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085539 CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004472 yigQ CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0101467 yigQ CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005502 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004930 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008388 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001042 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0263584 CDS
Person Approved Go view Shigella boydii 227 ADV-0003951 yibQ CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009462 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003191 CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004563 yibQ CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075391 yibQ CDS
Person Approved Go view Shigella flexneri 301 ABT-0089875 yibQ CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004162 yibQ CDS
Person Approved Go view Shigella sonnei 046 ADD-0004132 yibQ CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000192 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001332 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000229 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003170 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002778 CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001726 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0285052 yibQ pseudogene
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0256355 yibQ pseudogene
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0247539 yibQ pseudogene
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004000 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000065 yibQ CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000066 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004918 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0004818 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001110 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3783101 to 3794060
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0011795gpsACDScomplement37826423783661Upstream
ABE-0011798secBCDScomplement37836613784128Upstream
ABE-0011801grxCCDScomplement37841913784442Upstream
ABE-0011805yibNCDScomplement37845843785015Upstream
ABE-0011818gpmMCDSforward37852603786804Upstream
ABE-0011820envCCDSforward37868383788097Upstream
ABE-0011824yibQCDSforward37881013789060Matches
ABE-0011826waaHCDScomplement37890473790081Overlaps Downstream
ABE-0011830tdhCDScomplement37903203791345Downstream
ABE-0011832kblCDScomplement37913553792551Downstream
ABE-0011838htrLCDScomplement37928263793683Downstream
ABE-0011843rfaDCDSforward37939873794919Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.