Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011830 (tdh) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011830 showshow history
Names
tdh JW3591 ECK3606 b3616
Product
threonine dehydrogenase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3790320 3791345 1026 342
Sequence

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001360
EnteroFam0011830: Trusted threshold=996.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR004627 (IPR004627 L-threonine 3-dehydrogenase) Apr 2008
Automated Process Approved IPR013149 (IPR013149 Alcohol dehydrogenase, C-terminal) Apr 2008
Automated Process Approved IPR002328 (IPR002328 Alcohol dehydrogenase, zinc-type, conserved site) Apr 2008
Automated Process Approved IPR002085 (IPR002085 (DEPRECATED) Alcohol dehydrogenase superfamily, zinc-type) Apr 2008
Automated Process Approved IPR011032 (IPR011032 GroES-like superfamily) Apr 2008
Automated Process Approved IPR013154 (IPR013154 Alcohol dehydrogenase, N-terminal) Apr 2008
Automated Process Approved IPR011597 (IPR011597 (DEPRECATED) GroES-related) Apr 2008
Automated Process Approved IPR036291 (IPR036291 NAD(P)-binding domain superfamily) Jul 2018
Automated Process Approved IPR020843 (IPR020843 Polyketide synthase, enoylreductase domain) Jul 2018
Automated Process Approved PF08240 (PF08240 Alcohol dehydrogenase GroES-like domain) Jul 2018
Automated Process Approved PF00107 (PF00107 Zinc-binding dehydrogenase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009063 cellular amino acid catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR013154, IPR013149, IPR004627
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006567 threonine catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004627
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0051287 NAD binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011597
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011597
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008270 zinc ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004627
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008743 L-threonine 3-dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004627
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002328
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name tdh Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK3606 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW3591 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3616 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product threonine dehydrogenase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name threonine 3-dehydrogenase, NAD(P)-binding Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0011830: Trusted threshold=996.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001360
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR036291 NAD(P)-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036291
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR013149 Alcohol dehydrogenase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR013149
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004627 L-threonine 3-dehydrogenase Protein Sequence Similarity - InterPro Domain: IPR004627
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR002328 Alcohol dehydrogenase, zinc-type, conserved site Protein Sequence Similarity - InterPro Domain: IPR002328
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR020843 Polyketide synthase, enoylreductase domain Protein Sequence Similarity - InterPro Domain: IPR020843
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR013154 Alcohol dehydrogenase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR013154
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011597 (DEPRECATED) GroES-related Protein Sequence Similarity - InterPro Domain: IPR011597
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR002085 (DEPRECATED) Alcohol dehydrogenase superfamily, zinc-type Protein Sequence Similarity - InterPro Domain: IPR002085
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011032 GroES-like superfamily Protein Sequence Similarity - InterPro Domain: IPR011032
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF08240 Alcohol dehydrogenase GroES-like domain Protein Sequence Similarity - PFAM Model Name: PF08240
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00107 Zinc-binding dehydrogenase Protein Sequence Similarity - PFAM Model Name: PF00107
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Uncurated EC number 1.-.-.- Published Annotation - Database Name: EC2GO: GO:0016491
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 1.1.1.103 Published Annotation - Swiss-Prot Accession Number: P07913 Feb 2006
Person Uncurated MultiFun 1.7.30 (metabolism; central intermediary metabolism; threonine catabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.1.3 (metabolism; carbon utilization; amino acids) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P07913 Published Annotation - Swiss-Prot Accession Number: P07913 Jan 2005
Automated Process Approved db xref GeneID:948139 Published Annotation - Entrez Gene Database ID: 948139
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1790045 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P07913 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0011830 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10993 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Degradation of small molecules: Amino acids Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note threonine dehydrogenase; GO_process: GO:0009063 - cellular amino acid catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76640.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.97
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006567 threonine catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004627
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR013154, IPR013149, IPR004627
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0009063 cellular amino acid catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011597
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0051287 NAD binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011597
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008270 zinc ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004627
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008743 L-threonine 3-dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004627
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002328
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001360 tdh CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002179 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001662 tdh CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001811 tdh CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001676 tdh CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001834 tdh CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004465 tdh CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004100 tdh CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000160 tdh_1 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000661 tdh_1 CDS
Automated Process Approved Go view Dickeya chrysanthemi Ech1591 AFK-0009117 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017702 tdh CDS
Automated Process Approved Go view Dickeya parazeae Ech586 AGC-0004082 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000420 tdh CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001553 tdh CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004681 tdh CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003756 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007450 tdh CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003673 tdh CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000561 tdh CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005421 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007029 tdh CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008522 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080620 tdh CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004391 tdh CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005005 tdh CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006953 tdh CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010071 tdh CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004109 tdh CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008552 tdh CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005543 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008320 tdh CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006834 tdh CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006384 tdh CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005041 tdh CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009823 tdh CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005124 tdh CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007635 tdh CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005421 tdh CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005487 tdh CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005329 tdh CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005215 tdh CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005814 tdh CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028687 tdh CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005334 tdh CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008516 tdh CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004245 tdh CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003370 tdh CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003748 tdh CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004416 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004285 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004249 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004152 tdh CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178296 tdh CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003971 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003950 tdh CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134568 tdh CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002869 CDS
Person Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004171 tdh CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003753 tdh CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000847 tdh CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004009 tdh CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002546 tdh CDS
Automated Process Approved Go view Musicola paradisiaca Ech703 AGA-0004549 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003050 CDS
Automated Process Approved Go view Pantoea agglomerans SL1-M5 ALY-0000055 tdh CDS
Automated Process Approved Go view Pantoea ananatis AJ13355 AOV-0003174 tdh CDS
Automated Process Approved Go view Pantoea ananatis B1-9 APL-0000811 CDS
Automated Process Approved Go view Pantoea ananatis LMG 20103 AKB-0003999 tdh CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0000155 CDS
Automated Process Approved Go view Pantoea sp. At-9b AGM-0011627 CDS
Automated Process Approved Go view Pantoea sp. aB AJV-0000686 CDS
Person Uncurated Go view Pantoea stewartii DC283 ACV-0291536 tdh pseudogene
Automated Process Approved Go view Pantoea vagans C9-1 ALK-0006937 tdh CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060369 tdh CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000109 tdh CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0002354 tdh CDS
Automated Process Approved Go view Pectobacterium parmentieri WPP163 AFJ-0003022 tdh CDS
Automated Process Approved Go view Pectobacterium sp. PC1 AFL-0009391 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0147844 tdh CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008093 tdh CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004124 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004246 tdh CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008341 tdh CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011626 tdh CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011357 tdh CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005154 tdh CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008391 tdh CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005740 tdh CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006063 tdh CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006942 tdh CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007487 tdh CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008343 tdh CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006503 tdh CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003596 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003559 tdh CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004624 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008514 tdh CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004478 tdh CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007975 tdh CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004782 tdh CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113564 tdh CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085537 tdh CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004475 tdh CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0101472 tdh CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005500 tdh CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004928 tdh CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008390 tdh CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001041 tdh CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0268333 tdh CDS
Person Approved Go view Shigella boydii 227 ADV-0003953 tdh CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009464 tdh CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003193 tdh CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004565 tdh CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075386 tdh CDS
Person Approved Go view Shigella flexneri 301 ABT-0089878 tdh CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004158 tdh CDS
Person Approved Go view Shigella sonnei 046 ADD-0004128 tdh CDS
Person Approved Go view Vibrio cholerae N16961 ADH-0003778 VCA0885 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000194 tdh CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001331 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000226 tdh CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003169 tdh CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003849 tdh CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001727 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234373 tdh CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004170 tdh CDS
Person Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004154 tdh CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007786 tdh CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003228 tdh CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0115524 tdh CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007920 tdh CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006261 tdh CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001166 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005484 tdh CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007968 tdh CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029666 tdh CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005079 tdh CDS
Person Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004554 tdh CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004619 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008867 tdh CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0003999 tdh CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000064 tdh CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000065 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004920 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0004828 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001108 tdh CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21347mutantTn5 InsertionRequest the StrainABE-0011830tdhtdh::Tn5KAN-I-SceI at position 283 in Plus orientation ,- pKD460Blattner Laboratory
FB21348mutantTn5 InsertionRequest the StrainABE-0011830tdhtdh::Tn5KAN-I-SceI at position 283 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3785320 to 3796345
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0011818gpmMCDSforward37852603786804Downstream
ABE-0011820envCCDSforward37868383788097Downstream
ABE-0011824yibQCDSforward37881013789060Downstream
ABE-0011826waaHCDScomplement37890473790081Downstream
ABE-0011830tdhCDScomplement37903203791345Matches
ABE-0011832kblCDScomplement37913553792551Upstream
ABE-0011838htrLCDScomplement37928263793683Upstream
ABE-0011843rfaDCDSforward37939873794919Upstream
ABE-0011845waaFCDSforward37949293795975Upstream
ABE-0011847waaCCDSforward37959793796938Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.